Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0068 ATGTCCCATTTCTCTTCAGATCATGACCCTGTGACAACCGTTACAGGCATAACATACGAGAGAGAAAGCATTGAACATTGGTTGCAGAAAGCAAAAGATTGTTTACAAAGCAATCACTGCCAAGAAACTGAGTTCTTAACACCTAACCACACGCTTGGAAGGTTAATCCAATCATGGTATTCATCAAATGAATCAAACCGTGTTGATAAGATTTCAACTCCAAGATCCCTTCTTGAGAAGATCCACTTTAAGAAACTTGTTATGGATCTTGAGGTTCCTTGTTACTTTGAAAAAGCAATGGAGAAAATGCATGGTCTAGCTATAGAGAGCGAGAGAAATAGACAGTGTATGGTGGAAGCAGGAGTAGTCAATGCTATGGTTCATGTTATTACAAAGAGTTTCAAACAAGGTAGGACCAGGTGCCTTGAAGAAGCTCTTACAATTCTTTGTCTACTTTGGAATAGTGCAGCCATGGTCAACAATATGAAGCACTTAGTTGGTGAAAACTTGGACTTCATCAACTCGTTGACTTGGATTTTGCAACTTCATCAAGTGGATAACAATGTCAAGATGGTAAACGAAGTAATCCCTATATTGAAATCAACGATTGAAGTTGCCAATTCAACCATTTTAGGGAACTTGAAGCTTGAATTCTTCATAGAAATTATAAGTATAATAAAGAATAATAGAGCACTCTCACTACATGCTATCAAATCTGCCTTGCATGTCCTTATAGAAACGTGTTCTTTGGGTAGAAACCGTGTAAAGATTGTAGAAGCAGGTGCAGTTATGGAACTCATTGAGCTTGCACTTGAGAAACAAGAAAAGAACATAACTGAGCTTATGTTTATCCTTTTGGCACATCTATGTTCATGTGCTGATGGTAGAGAACAATTTCTACATCATGCAGCGAGCATAGCAATGCTTTCTAAAAAGACACTTAGGGTTTCATCCACGACGGATGATCAAGCTCTTCGTATATTTTCATTGATATCTAAGTTCTCAGCATCAAATGAAGTTGTTAAAGAGATGTTGAGGGTTGGTGCTGTGACAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCCTATTGTCAAGCACACCAATGTGAGTGA 1116 0.3835 MSHFSSDHDPVTTVTGITYERESIEHWLQKAKDCLQSNHCQETEFLTPNHTLGRLIQSWYSSNESNRVDKISTPRSLLEKIHFKKLVMDLEVPCYFEKAMEKMHGLAIESERNRQCMVEAGVVNAMVHVITKSFKQGRTRCLEEALTILCLLWNSAAMVNNMKHLVGENLDFINSLTWILQLHQVDNNVKMVNEVIPILKSTIEVANSTILGNLKLEFFIEIISIIKNNRALSLHAIKSALHVLIETCSLGRNRVKIVEAGAVMELIELALEKQEKNITELMFILLAHLCSCADGREQFLHHAASIAMLSKKTLRVSSTTDDQALRIFSLISKFSASNEVVKEMLRVGAVTKLCMVMQADCASYCQAHQCE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0068 371 Pfam U-box domain 9 64 IPR003613 GO:0004842|GO:0016567
Lal25g0068 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 74 IPR013083 -
Lal25g0068 371 Gene3D - 93 370 IPR011989 -
Lal25g0068 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 8 366 - -
Lal25g0068 371 SUPERFAMILY ARM repeat 32 358 IPR016024 -
Lal25g0068 371 SUPERFAMILY RING/U-box 8 63 - -
Lal25g0068 371 SMART Ubox_2 8 59 IPR003613 GO:0004842|GO:0016567
Lal25g0068 371 PANTHER WDSAM1 PROTEIN 8 366 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0068 Lal-Chr25 485506 486951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0068 9 363 U-box Gene Family AT2G35930 35.405 4.81e-64 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0068 - - gmx:100778547 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0068 25 485506 486951 Lal9g0349 9 2320385 2322367 PCT
Lal9g0349 9 2320385 2322367 Lal25g0068 25 485506 486951 PCT