Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0060 ATGGACATGATGGGAACCGAACGTGTTTGCTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGTATCTCTTCAAACATTTCCTCCTCAACACCCTCAGGCACAGAAACAGCACTTAAGCTTTGAAGAACAAAGTAGCAAGGAAGTGGGATCATCATCTTCAAAATGCAACAAATTTGCAGCATTTCAGACTGTAGACCACCACCAACAGCATAGAATTCCTCCCATTCGTCCTCCTGAGAAGAAACAACGTATTCCTTCTGCATATAATCGGTTCATCAAAGAAGAAATTCAAAGAATTAAGGCTAGTAATCCAGATATAAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCTCATTTTCCTCACATTAACTATGGGTTAAAGCTTGATGCCAACAAGCAAACAAATCTGCCGGGTGAGGGAACTCCTAAGTCGAACGAATTTTACTGA 546 0.4267 MDMMGTERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGVSLQTFPPQHPQAQKQHLSFEEQSSKEVGSSSSKCNKFAAFQTVDHHQQHRIPPIRPPEKKQRIPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHINYGLKLDANKQTNLPGEGTPKSNEFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0060 181 MobiDBLite consensus disorder prediction 58 79 - -
Lal25g0060 181 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Lal25g0060 181 SUPERFAMILY HMG-box 103 153 IPR036910 -
Lal25g0060 181 Pfam YABBY protein 6 159 IPR006780 GO:0007275
Lal25g0060 181 Gene3D High mobility group box domain 95 155 IPR036910 -
Lal25g0060 181 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0060 Lal-Chr25 433938 444313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0060 4 181 C2C2-YABBY Transcription Factor Family AT1G08465 59.783 2.91e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal25g0060 YABBY 7.2e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0060 K25796 - gmx:100785458 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0060 25 433938 444313 Lal25g0060 25 433938 444313 ECH
Lal25g0060 25 433938 444313 Lal8g0028 8 275587 281530 LSH
Lal25g0060 25 433938 444313 Lal2g0393 2 2372289 2377456 PCT
Lal25g0060 25 433938 444313 Lal9g0358 9 2389972 2396127 PCT
Lal2g0393 2 2372289 2377456 Lal25g0060 25 433938 444313 PCT
Lal9g0358 9 2389972 2396127 Lal25g0060 25 433938 444313 PCT