Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0057 ATGGAGTGGAGTAGAGGCCACATCATAGGCCATGGCTCATCAGCCACCGTCTATCTCGCCGCCTCTCACCACTCCACCACCACCACCACCATAACCGCTGTCAAGTCATCGGAGCTATCACATTCAGAACATCTTCAAAAAGAACAAAAAATCATGTCCTCTTTATCCTCTCCTTATATAGTTACCTACAAAGGCTATGATATTACCACCGAATACAAAACTCTCTACTACAATCTCTTCATGGAGTACATGCCTTATGGCACACTCTTTCAAGCCACTCGCCGCGGCCGCCATGGCCGGATTAATGAGCCACTGATAGCACTCTATACAACACAAATTGTGCATGGGCTAGAATACTTGCACTCAAAAGGGTTGGTGCATTGTGATATAAAGGGTAGCAATATATTGGCTAATGAAGATGGAGCCAAAATTAGTGACTTTGGATGTGCCAAGTATGTGAATGATAATGAGGTGGCGGTGGTGATGAGTGGCACACCAATGTTTATGTCGCCGGAGGTGGCGCGTGGAGAAGAACAAGGTTACCCATGTGATATTTGGGCACTAGGGTGCACCATAGTTGAAATTGCAACTGGGTTTGCACCATGGCCTAATGTACAAGACCCTGTTTCAATTTTGTACCATGTTGCATATTCTAATGAGGTTCCTGAGATTCCAAGTTTTCTATCTCATCAAGCAAAGGATTTCTTAGGGAAATGTTTCATGAGGAATCCAAAGGAAAGGTGGAGTGCTAGTCAACTATTGAAGCATCCATTTCTTGTGGAAATTAGTTTCAAAGGTAAGCAAATTATGGAATCTAATTCATGTTCACCAACTAGTATTCTTGACCAAGGCTTTTGGAATTCCGTTGAGGAATCAGAGTGCCAACTTGGTAACAATTTGGTTCAGACAAGTTTAGAGAATTCTGTAGCTGGTAGGATCAAATGGCTAGCCTTATGTTCAACGGATCCAAATTGGACATGGGATGATGAGAATTGGATAACAACAATAGGGAATAACAATGAAATTGTGGCTCAAGTTTAG 1041 0.4265 MEWSRGHIIGHGSSATVYLAASHHSTTTTTITAVKSSELSHSEHLQKEQKIMSSLSSPYIVTYKGYDITTEYKTLYYNLFMEYMPYGTLFQATRRGRHGRINEPLIALYTTQIVHGLEYLHSKGLVHCDIKGSNILANEDGAKISDFGCAKYVNDNEVAVVMSGTPMFMSPEVARGEEQGYPCDIWALGCTIVEIATGFAPWPNVQDPVSILYHVAYSNEVPEIPSFLSHQAKDFLGKCFMRNPKERWSASQLLKHPFLVEISFKGKQIMESNSCSPTSILDQGFWNSVEESECQLGNNLVQTSLENSVAGRIKWLALCSTDPNWTWDDENWITTIGNNNEIVAQV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0057 346 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0057 346 PANTHER MAP KINASE KINASE KINASE 1 341 - -
Lal25g0057 346 SMART serkin_6 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0057 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Lal25g0057 346 CDD STKc_MAPKKK 2 259 - -
Lal25g0057 346 Gene3D Transferase(Phosphotransferase) domain 1 2 317 - -
Lal25g0057 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 341 - -
Lal25g0057 346 SUPERFAMILY Protein kinase-like (PK-like) 3 270 IPR011009 -
Lal25g0057 346 Pfam Protein kinase domain 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0057 Lal-Chr25 409954 410994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0057 1 289 MAP Kinase Kinase Kinase AT2G32510 53.898 5.87e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal25g0057 Pkinase 1.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0057 K20716 - pvu:PHAVU_005G115900g 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0057 25 409954 410994 Lal8g0035 8 309994 313260 LSH
Lal25g0057 25 409954 410994 Lal9g0367 9 2447080 2448318 PCT
Lal9g0367 9 2447080 2448318 Lal25g0057 25 409954 410994 PCT