Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0054 ATGATAGTCAATTTCGATTTTTCTTGTTCATTTCAAGAATCTAATTCTTTTCTTTCTGTTTATTTATTTGCAGAAGTTGAAGGCAATGAAGATTATTCAAATTTGGAAGATTCCTTGAATCAAGAACTAACTTCAGGTGTTGGTATTTCTGGTGGAAAAGGTGATGCTTCTGATGGTAGCAAACCGCATAATGTGCATGGATATAATGAGAACAACTTAATGGTTCAGCAGCAATTGGCTTCCCATGATTTGACTGGAATTAGAAAGAAGAAAAATGCAAAAAAAGGAAGAATGGAACCGCCTTTGTTATGGAAAGTGTGGGAAAAGATGAACGACAAATGGCTTGATGAGAATCCATTTAAAGATGTCAAATTAGATGAGCAGAATGAGATAATATATGAAACTGCTGAACCATCCTCTGATCTGACTATGCCTTTGCTTAGACACCAAAAGGAATGGTTATCTTGGGCTTTGAAACAGGAAAAATCTGAAATTAGAGGTGGAATCCTTGCAGATGATATGGGAATGGGGAAAACTATTGAAGCAATTGCCCTTGTCCTTGCAAAACGCGAGTTACGCCTAACGAATCGTGAACCAAATGAACCGATATCCTCACCTTCACCAGGTTCATCTAAAGTTCTGCCTTTAATCAAGGGAACACTTGTCATATGTCCTGTAGTTGCTGTCACTCAGTGGGTTAATGAGATTGATCAATGCACTTCAAAAGGAAGCACCAAGGTGTTGGTTTATCATGGGGCAAGGAGAGGGAAGAGTGTTGAACAGTTCCCAGAATATGATTTTGTGATAACTACCTACTCTACTGCTGAGTCTGAGTACAGGAAGGATATGATGCATCTTTATGAGGAAGTTAAGAATGTTAGAACTGGAAAAAAAACAAAGCAATTTAAGAAAAAGAAAAAGGAAGTCACTGAAGAGCATGAAGATGTCACAGGCAAGGATATGTCACTTATACATGCTGTAAAGTGGGAGCGGATCATATTGGATGAGGCACACAAAATAAAAGATATATATTCTAAAACTGCAAAAGCAGTTTTTGCCTTAGAGTCTTCCTACAAATGGGCATTAAGTGGCACTCCCATTCTGAGCAGTCTTGGAGAGATGCGATCTCTGGTACGGTTCTTGCAAATAGTTCCTTATTCCTATTACTTGTGCACGGAATGTAATTGCATGAGCATGACTCTTGATCGTAGCTCTGAAGAATGTCCAAACTGCACCCACCATCCCTATAATCATTTCTGTTGGTGGAAGAAATATGTGGGCAAACCAATGAAATCTCACCGAAATGATTCTTTGAGAAAAAGAGCTAAGATATTGCTTAAGAACAGAGTTCTGAAGAGCATACTACTGAGGCGAACTAAAATAGGTAGAGCTGCTGATCTTGCACTTCCACCTAGAATTCTTTCATTGAGAAGAGATTGCCTGGATATAAAAGAGCAGGACTATTATGAATCGTTATACAAAGAAACTCAGGCACAGTTTAACACGTATATTGTAGAAAATACAGTGATGAAGAACTTTTGCCATTTATTTGACATCCTCACGCGACTACGTCAGGCTCTCTGCCATCCATACCTTGTGGTATATTCTGAAACTACAACATCAAGAGGACAAGAATGTGGCATTTGTCATGAAGCAACAGAAGATCTTGTGGTAAGTATGTGTTTCATTTCATATCATTTTACCTTTTTTCTGCCCTTTCATGCTTTTTGTTGTTTCAGGTTACCTCCTGTCAACATATATTTTGCCAGGCATGCTTGGTGGGACAAGTATCATGCCCCTCATGCTCGAAATAAGATTCATGATCGAAAGGGATGGTCTGGAGTCTGTAGCATTCAATTGAATGGATCAATGTCATTGCCTGCTAGGGATGCTGCCATCAAGAGATTTAAGGAAGATCCAGACTACAAAATTTGA 1935 0.3876 MIVNFDFSCSFQESNSFLSVYLFAEVEGNEDYSNLEDSLNQELTSGVGISGGKGDASDGSKPHNVHGYNENNLMVQQQLASHDLTGIRKKKNAKKGRMEPPLLWKVWEKMNDKWLDENPFKDVKLDEQNEIIYETAEPSSDLTMPLLRHQKEWLSWALKQEKSEIRGGILADDMGMGKTIEAIALVLAKRELRLTNREPNEPISSPSPGSSKVLPLIKGTLVICPVVAVTQWVNEIDQCTSKGSTKVLVYHGARRGKSVEQFPEYDFVITTYSTAESEYRKDMMHLYEEVKNVRTGKKTKQFKKKKKEVTEEHEDVTGKDMSLIHAVKWERIILDEAHKIKDIYSKTAKAVFALESSYKWALSGTPILSSLGEMRSLVRFLQIVPYSYYLCTECNCMSMTLDRSSEECPNCTHHPYNHFCWWKKYVGKPMKSHRNDSLRKRAKILLKNRVLKSILLRRTKIGRAADLALPPRILSLRRDCLDIKEQDYYESLYKETQAQFNTYIVENTVMKNFCHLFDILTRLRQALCHPYLVVYSETTTSRGQECGICHEATEDLVVSMCFISYHFTFFLPFHAFCCFRLPPVNIYFARHAWWDKYHAPHARNKIHDRKGWSGVCSIQLNGSMSLPARDAAIKRFKEDPDYKI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0054 644 MobiDBLite consensus disorder prediction 46 67 - -
Lal25g0054 644 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 285 - -
Lal25g0054 644 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 321 543 - -
Lal25g0054 644 Pfam SNF2-related domain 160 533 IPR000330 GO:0005524|GO:0140658
Lal25g0054 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 384 IPR014001 -
Lal25g0054 644 SMART ultradead3 142 389 IPR014001 -
Lal25g0054 644 PANTHER - 88 285 - -
Lal25g0054 644 PANTHER - 321 543 - -
Lal25g0054 644 CDD DEXDc_SHPRH-like 146 458 - -
Lal25g0054 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 434 IPR027417 -
Lal25g0054 644 Gene3D - 120 475 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0054 Lal-Chr25 402377 406093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0054 88 561 RAD5 or RAD16-like Gene Family AT1G05120 50.564 2.04e-173 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal25g0054 SNF2_N 6.8e-47 CL0023