Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0048 ATGGAGTTGCTTTGTTTCACAAGGCATTGTGTCAAATTTATGTGCAAGTTGTTATTGTTCCTCCTGGTTTTGTGCTTGTGGATTCCAAGGGAAGTAGCTGAGAGGACAGGAATTACTACCATTTCAAATTCTACTGGTTTTTCTTCAAGACCAAGTGTTTTGAGAATTGGAGCATTGTTTACTTTTAATTCTGTTATTGGAAGATCGGCTAGACCGGCAATTATGGCTGCAATTGATGATGTTAATGCTAATACCACCATTCTCCCTGGCACTAAATTGGAAGTTATTTTACATGATACAAAATGCAGTGGCTTTCTTGGTACAGTGGAAGCTCTGCAGCTGATGGAAAATGATGTAGTTGTCGTGATTGGTCCACAGTCTTCAGGAATAGCACACACAATCTCTCATGTAGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGTGCAACAGACCCTTCTCTATCTTCTCTTCAGTATCCTTATTTCATCAGAACCACTCAGAATGACCATTTCCAAATGTATGCAATTGCTGACTTGGTTGACTACTACAGATGGAAGGAGGTAATAGCCATCTTTGTAGATGATGATAATGGAAGGAATGGAGTTTCTGCATTGGGAGACGCTTTGGCGAAAAAGCGTGCAAAGGTTTCTTATGAGGCTGCTTTCACTCCTGGTGCAACCAAAAGTGATATTAGTGACTTGTTAAATGAAGTTAACTTAATGGAATCGCGTGTCTATGTTCTTCATGTTAATCCTGATTCTGGTTTGGAAATTTTCTCTATTGCCAAGAAGCTAGGAATGATGACAAGGGGTTATGTATGGATTTCAACGGATTGGCTTCCTTCAGTGTTGGATTCATTAGAGAATGTTGACACTGACAGTGATGCAATGAATCTCTTACAAGGGGTTATCGCTTTTCGTCATCACACTCCAGATACTAATCTTAAAAAGAGTTTTATCTCCAGGTTGAAAAGCCTTAAAGACAAGGATACTAAAAACTTCAACTCTTATGCACTATATGCATATGATTCTGTTTGGTTAGCAGCATATGCTCTTGATGTTTTTCTCAAAGAAGGTGGAAACACATCTTTCTCATCTGACCCTGTGTTGCATGACAAAAATGGAAGCATGTTACATTTATCATCGCTTCGTGTTTCCAATGGTGGCCAACAGTTTCTGCAGAAAATTTTGAAAACAAACTTCACCGGTATCAGTGGTCAGATTCAGTTTGATATGGATAAGACTTTAATCCATCCAGCATACGATATTCTGAATATCGGTGGACTCGGATCACGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTATCAGTTATAGCTCCTGAAGTATTATATCAGAAACCACCTAACACTTCAATAAGCAATCAGCAATTGTACAGTGTTATATGGCCTGGAGAGACAACAACAACACCAAGGGGATGGGTATTTCCTAACAATGGAAAGCCATTGAGAATAGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAGGACAAGAACCCTCCTGGTGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCGTAAACTTGTTGCCATACCCTGTCCCGCGACAGTATATACTATTTGGAAACGGAGATACGAATCCTGACTATAATGACCTTGCATATCAGCTTTCACAAAGTAACTTAGATGCAGCTGTTGGAGATGTTACAATAATCACAAACAGGACAAGGTTTGTGGATTTTACTCAACCATTCATGGAATCAGGGTTGGTTGTTGTTGTTCCTCTGAAGAGGATAAAGTCAAGTTCTTGGTCTTTCCTCGAGCCATTCACAACTCAAATGTGGTGTGTTACTGCTGCATTCTTTCTTTTTGTGGGAATCGTTGTTTGGGTTCTTGAACACCGGCACAATAAGGAGTTTCGTGGTACACCAAGGCAACAAGTCACTACAGTCTTTTGGTTTACTCTGTCAACAATGTTTTTCTCACACAGAGAGAACCCTGTAAGTACTCTTGGGAGATTGGTGCTGATCATATGGCTTTTTGTTGTGTTAATAATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTAACAGTGCAACACCTTTCATCACAAATTCAAGGCATTGATAGCTTGACCTCAGGTAGTCAACTAATTGGAATTCAAGAAGGGTCATTTGCAAAGAAGTATCTCATTGATGAGCTCAATATAGCACCATCTAGGATAGTTACTTTGAAAAATCAGGATGCATATATCGATGCACTTACGCGTAGACCAAAAAATGGCGGGGTTCTGGCCATTGTTGATGAACTTCCTTATGTTGAACTCTTCATGTCCAGTACAAACTGTAAGTTCAGAACAGTTGGGAAGCAGTTCACCAAAAGTGGTTGGGGATTTGCATTCCAAAGGGACTCTCCCCTAGCTATTGATTTATCAACTGCAATTCTTCAACTATCTGAGAATGGTGATTTGCAAAAGATACATGACAAGTGGCTTTTGAAACATGATTGTGTAGTAGAATTCAGTGATGATGAATCATATAAACTATCTCTGAGTAGCTTTTCAGTCCTCTTTCTTTTCATTGGCATTGCATGTTTCATTGCTCTCACAGTATTCTTTATTAAAGTGATGTGTCAATATAACAAATTCAACCCTGACCCTGATGAGGAACATGTTGATGATGAAGTTCAACCTCAACCAGCCAGGTTCAAAAGGCATATCTTAACGGCTAGCTTCAGGGACTTGATGGATTTTTTGGATAAGAGAGAAGCAGATATCAAAGACATTCTTAGACACAAGAGTAAAAAAAGGAGAAGAAACCAAAACTCATAA 2832 0.3927 MELLCFTRHCVKFMCKLLLFLLVLCLWIPREVAERTGITTISNSTGFSSRPSVLRIGALFTFNSVIGRSARPAIMAAIDDVNANTTILPGTKLEVILHDTKCSGFLGTVEALQLMENDVVVVIGPQSSGIAHTISHVVNELHVPLLSFGATDPSLSSLQYPYFIRTTQNDHFQMYAIADLVDYYRWKEVIAIFVDDDNGRNGVSALGDALAKKRAKVSYEAAFTPGATKSDISDLLNEVNLMESRVYVLHVNPDSGLEIFSIAKKLGMMTRGYVWISTDWLPSVLDSLENVDTDSDAMNLLQGVIAFRHHTPDTNLKKSFISRLKSLKDKDTKNFNSYALYAYDSVWLAAYALDVFLKEGGNTSFSSDPVLHDKNGSMLHLSSLRVSNGGQQFLQKILKTNFTGISGQIQFDMDKTLIHPAYDILNIGGLGSRRIGYWSNHSGLSVIAPEVLYQKPPNTSISNQQLYSVIWPGETTTTPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVKGYCIDVFEAAVNLLPYPVPRQYILFGNGDTNPDYNDLAYQLSQSNLDAAVGDVTIITNRTRFVDFTQPFMESGLVVVVPLKRIKSSSWSFLEPFTTQMWCVTAAFFLFVGIVVWVLEHRHNKEFRGTPRQQVTTVFWFTLSTMFFSHRENPVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQHLSSQIQGIDSLTSGSQLIGIQEGSFAKKYLIDELNIAPSRIVTLKNQDAYIDALTRRPKNGGVLAIVDELPYVELFMSSTNCKFRTVGKQFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHDKWLLKHDCVVEFSDDESYKLSLSSFSVLFLFIGIACFIALTVFFIKVMCQYNKFNPDPDEEHVDDEVQPQPARFKRHILTASFRDLMDFLDKREADIKDILRHKSKKRRRNQNS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0048 943 Pfam Receptor family ligand binding region 71 427 IPR001828 -
Lal25g0048 943 Pfam Bacterial extracellular solute-binding proteins, family 3 548 833 IPR001638 -
Lal25g0048 943 SUPERFAMILY Periplasmic binding protein-like I 49 483 IPR028082 -
Lal25g0048 943 SUPERFAMILY Periplasmic binding protein-like II 467 833 - -
Lal25g0048 943 Gene3D - 73 419 - -
Lal25g0048 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 67 83 - -
Lal25g0048 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 127 155 - -
Lal25g0048 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 342 354 - -
Lal25g0048 943 CDD GluR_Plant 489 832 - -
Lal25g0048 943 PIRSF IGluLR_plant 11 943 IPR017103 -
Lal25g0048 943 PANTHER GLUTAMATE RECEPTOR 3.4 44 930 - -
Lal25g0048 943 Pfam Ligand-gated ion channel 834 865 IPR001320 GO:0015276|GO:0016020
Lal25g0048 943 Gene3D - 603 727 - -
Lal25g0048 943 SMART GluR_14 492 834 IPR001320 GO:0015276|GO:0016020
Lal25g0048 943 Gene3D - 169 444 - -
Lal25g0048 943 Gene3D - 486 602 - -
Lal25g0048 943 CDD PBP1_GABAb_receptor_plant 55 446 IPR044440 -
Lal25g0048 943 Gene3D - 728 835 - -
Lal25g0048 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0048 Lal-Chr25 347623 352789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0048 1 799 Ion Channels AT1G05200 63.027 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0048 K05387 - gmx:100799912 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0048 25 347623 352789 Lal25g0048 25 347623 352789 ECH
Lal25g0048 25 347623 352789 Lal10g1296 10 18999932 19003564 LSH
Lal25g0048 25 347623 352789 Lal8g0038 8 338652 344515 LSH
Lal9g0385 9 2543834 2549545 Lal25g0048 25 347623 352789 PCT