Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0047 ATGCCATCTATGATTGAAAGAAACGGCACCGTTCTTGAATCTCTATCTCTTAGTCAGATAATGTTCCAGCCAAACATGTTGGAAGGCCTTCACCCTTTGGACATGGCGGCTCAGAATACTCCAGAGAGTGATATCCCTAGAACCCGCAACGATGACTTTGACAGTGGCACAAAATCCGGCAGTGAAAATCATGACGGCGGTGCCTCCGGCGAGGACCAAGATCCACGTCCTAATAAGAAGAAGAAGCGGTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTAGAGAATTGGGGTTAGAGCCATTACAAGTCAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACATGAGCGCCATGAGAACACACAACTTAGGACTGAAAATGATAAGCTTCGTGCAGAAAACATGAGGTACCGGGAAGCTCTTACCAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCTATAGGAGAAATGTCATTTGATGAACATCAACTGAGGCTTGAAAATGCTCGCCTAAGAGAAGAGATTGATAGGATTTCTGCTATAGCTGCCAAGTACGTAGGGAAGCCAGTGGTGAATTATCCACTTCTTTCATCCCCATCTGTTCCTCCACGTTCACTAGAACTTGGAGTTAATGGTGCTTTTAGTGGACAACAAGGTGGCATTGATATGTATGGATCTGGAGATCTTCTAAGGTCAATAAATGGGCCCACTGATGCTGATAAACCAATCATAATTGAGCTTGCTGTTGCAGCCATGGAGGAGCTTATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTGACCACACTTGATGGCTCCACCACTGTGCTAAATGAGGATGAATATGTTAGGTCTTTTCCTAGAGGTATTGGACCTAAACCTAATGGGTTCAAGTGTGAAGCTTCACGTGAAACTGCTGTGGTTATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGCGCACCAATGGTCTACAGTGTTCTCTGGTATAGTCTCAAGAGCTGTGACTCTGGAAGTGCTATCAACAGGAGTTGCAGGGAACTACAACGGTGCCTTGCAAGTGATGACAGCAGAATTACAAGTACCAACACCTCTTGTGCCAACTAGAGAGAGTTACTTTGTGAGGTATTGTAAGCAGCACCCTGATGGAACATGGGCAATAGTTGACGTATCATTGGATAATTTGCGCCCTACTCCTTCAGCTAAATGTAGAAGAAGGCCTTCTGGTTGCTTGATTCAAGAATTGCCCAATGGCTACTCAAAGGTCACATGGGTGGAGCATGTGGAAGTTGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATCTCAACCTTGGATCGACAATGTCAAAGGCTTGCTAGTTCCATGGCAACAAACATGCCCACTGTAGATGTTGGCGTGATAACAAACCAAGAAGGAAGGAAAAGCATGTTGAAACTGGCAGAGAGAATGGTAATAAGCTTCTGTGCTGGAGTGAGTGCTTCAACTGCACATACGTGGACAACATTATCAGGATCAGGGACAGGTGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGATCCTGGAAGACCACCTGGTATTGTTCTTAGTGCTGCAACCTCTTTTTGGCTTCCAGTGTCACCTGAAAGAGTCTTTGAATTCCTCCGTGATGAGAATTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCCAATGGAAGAGACACTGGAAATAGTGTTTCTCTACTTCGAGTGAATAGTGCAAATTCAAGTCAAAGCAACATGTTAATATTACAAGAGAGTTGCACTGATTCAACTGGCTCTTTTGTAATTTATGCTCCTGTAGATATTGCAGCAATGAATGTTGTTCTAAATGGAGGGCATCCAGACTATGTGGCCCTTCTTCCTTCTGGGTTTGCAATACTCCCTGATGGGACCACAACACATGGAAGTGGCATTATTGAAACTGACCATGGTGGTTCTCTTTTAACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACAGCCAAGCTTTCACTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGCACTGTTGAGAGAATTAAGGCTTCCCTAACTGGTGAAGCTGCTTAA 2259 0.4391 MPSMIERNGTVLESLSLSQIMFQPNMLEGLHPLDMAAQNTPESDIPRTRNDDFDSGTKSGSENHDGGASGEDQDPRPNKKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENDKLRAENMRYREALTNASCPNCGGPTAIGEMSFDEHQLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSPSVPPRSLELGVNGAFSGQQGGIDMYGSGDLLRSINGPTDADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGSTTVLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDAHQWSTVFSGIVSRAVTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPTRESYFVRYCKQHPDGTWAIVDVSLDNLRPTPSAKCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWISTLDRQCQRLASSMATNMPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPERVFEFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIAAMNVVLNGGHPDYVALLPSGFAILPDGTTTHGSGIIETDHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLTGEAA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0047 752 Pfam Homeodomain 81 136 IPR001356 GO:0003677
Lal25g0047 752 SMART START_1 271 491 IPR002913 GO:0008289
Lal25g0047 752 Coils Coil 137 164 - -
Lal25g0047 752 Gene3D - 68 155 - -
Lal25g0047 752 Gene3D - 319 491 IPR023393 -
Lal25g0047 752 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Lal25g0047 752 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Lal25g0047 752 SMART HOX_1 79 142 IPR001356 GO:0003677
Lal25g0047 752 SUPERFAMILY Bet v1-like 510 744 - -
Lal25g0047 752 CDD homeodomain 81 139 IPR001356 GO:0003677
Lal25g0047 752 SUPERFAMILY Bet v1-like 262 493 - -
Lal25g0047 752 Pfam START domain 272 491 IPR002913 GO:0008289
Lal25g0047 752 ProSiteProfiles START domain profile. 262 494 IPR002913 GO:0008289
Lal25g0047 752 MobiDBLite consensus disorder prediction 37 89 - -
Lal25g0047 752 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 34 749 IPR042160 -
Lal25g0047 752 SUPERFAMILY Homeodomain-like 65 138 IPR009057 -
Lal25g0047 752 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 34 749 - -
Lal25g0047 752 CDD START_ArGLABRA2_like 266 490 - -
Lal25g0047 752 MobiDBLite consensus disorder prediction 45 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0047 Lal-Chr25 340502 347138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0047 21 752 Homeobox Transcription Factor Family AT1G05230 77.131 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal25g0047 START 1.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0047 K09338 - gmx:100809556 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0047 25 340502 347138 Lal25g0047 25 340502 347138 ECH
Lal25g0047 25 340502 347138 Lal1g0492 1 3113759 3118186 PCT
Lal25g0047 25 340502 347138 Lal2g0415 2 2482576 2488061 PCT
Lal25g0047 25 340502 347138 Lal9g0387 9 2559705 2566312 PCT
Lal1g0492 1 3113759 3118186 Lal25g0047 25 340502 347138 PCT
Lal2g0415 2 2482576 2488061 Lal25g0047 25 340502 347138 PCT
Lal9g0387 9 2559705 2566312 Lal25g0047 25 340502 347138 PCT