Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0043 ATGAACGACCTTCTCACTGACTCATTTATTATTGAGGCTAAGAATGCCCCGCCTTCTAGACAAGGTGATATTGAAATGGGATTGCAAGGTCCAGGAAGCAACTCTGATATGGGATTGGAAGCTTTTAATAAGCAGATCCACGAGGCTGATAAACAAATTGATAAGCTATCTGTGCTTCTTCAAAACCTGAAGGAAGCTAATGAGGAATCAAAAGCTGTTACCAGAGCATCTGCGATGAAAGCCATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCATATGGCGTCAAAACAAGAATAGAAGCTATAAGCAGAGATAATCTGAACAATCGAAAAAATCCTGGTTGTGAGAAGGGAACCGGTATTGATAGAGCAAGGATGAATATGACAAATGCCTTGACTAAAAGGTTCAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAAGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCGGATGATGAGACAATTGATCACCTGATAGAGACAGGAAATAGTGAACAGATCTTTCAGCAGGCAATTCTAGAAACAGGCAGAGGACAGGTTGTAAGCACAGTTGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAGCTTCTCGATTTACATCAGGTTTATCTTGATATGGCTGTCTTAATTGATGCACAAGGAGAAATTTTAGACAACATCGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCGCTTCAGACTGCTAAGAAACTGCAGAAGAGTTCTCGAAAATGGATGTGCATTGGCATCATTATACTGTTGATAGTAATAGCCGTCATAGTTGTTGGTGTTATCAAACCTTGGAAGAAAGCTTGA 924 0.4015 MNDLLTDSFIIEAKNAPPSRQGDIEMGLQGPGSNSDMGLEAFNKQIHEADKQIDKLSVLLQNLKEANEESKAVTRASAMKAIKKRMEKDIDEVGKIAYGVKTRIEAISRDNLNNRKNPGCEKGTGIDRARMNMTNALTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILETGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQVYLDMAVLIDAQGEILDNIESQVNNAVDHVQRGTTALQTAKKLQKSSRKWMCIGIIILLIVIAVIVVGVIKPWKKA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0043 307 SMART tSNARE_6 204 271 IPR000727 -
Lal25g0043 307 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 300 - -
Lal25g0043 307 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Lal25g0043 307 SMART SynN_4 34 160 IPR006011 GO:0016020
Lal25g0043 307 Coils Coil 39 76 - -
Lal25g0043 307 Gene3D - 202 302 - -
Lal25g0043 307 Gene3D - 39 167 - -
Lal25g0043 307 PANTHER SYNTAXIN 7 300 IPR045242 -
Lal25g0043 307 Pfam SNARE domain 245 297 IPR000727 -
Lal25g0043 307 CDD SNARE_syntaxin1-like 208 270 - -
Lal25g0043 307 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lal25g0043 307 CDD SynN 39 196 IPR006011 GO:0016020
Lal25g0043 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0043 Lal-Chr25 290614 294451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0043 1 304 SNARE and Associated Proteins AT3G03800 60.855 9.29e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0043 K08486 - gmx:100800991 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0043 25 290614 294451 Lal25g0043 25 290614 294451 ECH
Lal25g0043 25 290614 294451 Lal8g0041 8 362170 366304 LSH