Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0013 ATGAAGCTGACAGTGAAGACTCTCAAAGGCACCCATTTCGAAATTAGGGTTCATTCCTACGACACTATAATGGCCGTGAAGAAGAATATTGAAGATGTTCAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCTCACAATAATGTCTCTGAAGACGCTTTTCTTGTTGTCATGCTTAGTAAGGTACTAAAACATTGGCTTCTGCTGGAACTTCATCCACTCAGGCATCCTGCTAGCAACCCACCTACAACTCTATCAACATCAAATTCTACTCCTCAACTTCAAACTCAGGCTTCAAATAATGATCCACCTGCAACAGATGCCGCAACTACGAATCTGGCTACAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTGGTAATCTTGAGCAGACTATTCAAGAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGATACAGTTAGTCGTGCTCTTCGAGCAGCTTACAATAATCCAGAACGTGCTGTAGATTACTTGTATTCTGGGATTCCTGAAGCAGCAGAAGTTGCTGTACCAGCTCCTCATTTCCCAAGTAGTCAGACAACTGAAACAGGTGGGGTCACTGCTGGAGCTGTTCCTGGGGTACCTAACTCGTCTCCCTTAAATATGTTTCCACAGGAGGCAGTTTCTGGTGGTGGTGCTGGAATTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTACGTTCAATGGTACAATCCAATCCCCAAATTCTGCAGCCAGTGCTTCAGGAACTTGGAAAACAGAATCCCAGTCTCTTAAGACTAATTCAAGAGCATCATGCTGAGTTTCTTCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGGGATATATTTGACCAGCCTGAGCAAGACATGCCTCATGCCATCAACGTGACACCAGCTGAGCAACAGGCAATTGCAAGGCTTGAGGCTATGGGATTCGATAGAGACTCTGTTATAGAGGCATTTTTAGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAAAATGCTGGAGACTTTGAGGATTAA 1110 0.436 MKLTVKTLKGTHFEIRVHSYDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAHNNVSEDAFLVVMLSKVLKHWLLLELHPLRHPASNPPTTLSTSNSTPQLQTQASNNDPPATDAATTNLATDTYGQAASNLVAGGNLEQTIQEIMDMGGGNWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEVAVPAPHFPSSQTTETGGVTAGAVPGVPNSSPLNMFPQEAVSGGGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQQAIARLEAMGFDRDSVIEAFLACDRDEQLAANYLLENAGDFED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0013 369 Pfam XPC-binding domain 244 299 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lal25g0013 369 Gene3D - 1 77 - -
Lal25g0013 369 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 368 - -
Lal25g0013 369 Pfam UBA/TS-N domain 325 360 IPR015940 -
Lal25g0013 369 Pfam UBA/TS-N domain 146 184 IPR015940 -
Lal25g0013 369 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lal25g0013 369 PRINTS DNA repair protein Rad23 signature 270 292 IPR004806 GO:0006289
Lal25g0013 369 PRINTS DNA repair protein Rad23 signature 319 335 IPR004806 GO:0006289
Lal25g0013 369 PRINTS DNA repair protein Rad23 signature 336 350 IPR004806 GO:0006289
Lal25g0013 369 PRINTS DNA repair protein Rad23 signature 351 366 IPR004806 GO:0006289
Lal25g0013 369 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lal25g0013 369 SMART uba_6 146 186 IPR015940 -
Lal25g0013 369 SMART uba_6 325 362 IPR015940 -
Lal25g0013 369 SUPERFAMILY UBA-like 143 194 IPR009060 GO:0005515
Lal25g0013 369 MobiDBLite consensus disorder prediction 94 125 - -
Lal25g0013 369 SMART ubq_7 1 75 IPR000626 GO:0005515
Lal25g0013 369 Gene3D - 316 364 - -
Lal25g0013 369 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lal25g0013 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 187 IPR015940 -
Lal25g0013 369 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 368 - -
Lal25g0013 369 SUPERFAMILY UBA-like 304 366 IPR009060 GO:0005515
Lal25g0013 369 TIGRFAM rad23: UV excision repair protein Rad23 1 368 IPR004806 GO:0006289
Lal25g0013 369 Gene3D - 139 189 - -
Lal25g0013 369 Gene3D - 234 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal25g0013 369 SUPERFAMILY XPC-binding domain 242 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal25g0013 369 CDD Ubl_Rad23 1 74 - -
Lal25g0013 369 CDD UBA1_Rad23_plant 140 189 - -
Lal25g0013 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 323 363 IPR015940 -
Lal25g0013 369 SMART CBM 242 285 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0013 Lal-Chr25 125443 129034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0013 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 7.91e-07 46.6