Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0010 ATGCATTGTTGTCTTTCTAATTTATCTATCTGCATTCATTTCCCTGCCTCCTACCAATACAATACAATACAATACAATACAATACATACCATCTCTCTCTCTCTCTGTGTGTATTTTTTAGAATTAGCATCAAGTAATAGGAGCATGAGTGAGATGATGACATCCACGTCGCGGGTTTCCACCTCCTCTTCCAATGGTCTCCTCACCGTTACCATCGCTGATAGTACCACTAAGGACAATGACAATGCTATTGATGATGATGACGACTTGCTCGTCGACCCGGATGATCCTTTTGATATTACTCAAACCAAAAATGCACCTCCTGAGTCTCTCAAGCGTTGGAGGCAAGCTTCATTTGTGTTAAACGCTTCAAGGCGTTTTAGATATACTCTTGACTTGAAGAAGGAAGAGGAGAAAGAGGAAAAGAAATCCATGATTAGAGCCCATGCCCAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGTGAACTAGTGACAAGTTCATCAGTCACGGCCCCAACTCCAGTTGGTAACTATGGAGTTGGCCTTGAACAACTCGTTTCTATGTCTAAGGATCAGAGTGTTTCTGCCTTACAACAATACGGAGGGGCAAATAATGGCATTAGTGGAGATGATGCTGATCTAATAGAAAGGAAAAATGAATTTGGCACTAATACATATCCTCGCAAGAAGGGCAGAAGTTTCTGGAGGTTTCTATGGGAATCATGGCAAGATCTGACCCTAATAATATTGATTATAGCAGCTGCGGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTAGAAGAAGGATGGTATGACGGGGGAAGCATTGCTTTTGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTGAGTGATTATCGACAATCCCTGCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAACTAGAGGCCATTAGAGGTGGTAGAACTATAAAAATATCAATATTTGATATTGTTGTTGGTGAAGTGGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACCGGTGAAAGCAAGATTGTTCACAAGGATCACAAAGCACCCTTTTTGATGTCCGGTTGCAAAGTAGCAGACGGAGTTGGTTCTATGCTGGTAACTGGTGTTGGCATCAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCTTTACAGGTACGATTAAATGGAGTAGCAACTTTTATTGGCATAGTTGGACTTACTGTAGCTGTTCTTGTGCTTGTTGTCCTCTTGGGAAGATTCTTTTCCGGCCATACAAAAGATTTAGATGGAAATGTGCAATTTGTTGCTGGAAAGACTAGTATTAGTGATGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCCGAAGGCTTACCTTTAGCTGTTACCTTAACCTTGGCATACTCCATGCGCAAAATGATGGCAGACAAAGCCTTGGCAATTACGCAGGTACGAAGGCTGTCGGCTTGTGAAACTATGGGCTCCGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAACTAAATCCACCAGATGATTCGTCAACGATGCATCAAGAAGTTTTATCTCTGATAAATGAGGGCATTGCACAAAATACAACTGGCAATGTTTTTGTGCCCAAGGATGGTGGAGAGACAGAGGTGACAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAATGAAGTTGGGGATGAAATTTGATCTTCTCAGAAAAGCTTCAACAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTATTGCTGTAAAGGTATTTTTCAAGGATGCTATTGATGATATGGCTGCTCAGAGCCTGCGGTGTGTTGCCATTGCATACAGACCATATGAATTGGACAAAGTTCCGTCTAAAGAGGAGGACTTAGAGCAGTGGTCCTTACCAGAAAACGACCTTATTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGACCAGGAGTTAAAGAAGCTGTAAGAATATGTGCGGATGCTGGCGTTAAGGTACGCATGGTTACGGGGGACAATCTTCAAACTGCAAAGGCAATAGCTTTGGAGTGCGGAATACTGACTTCAACTGAAGAAGCTGTTGAGCCAACTATAATTGAAGGAAAGACATTCCGTGAATTATCTGAAACAGAAAGGGAGCAAGTTGCTAAAAAAATAACGGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTACTGGTTCAAGCACTTCGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGTACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCTCAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGATGATAACTTTGCGTCAGTAGTGAAGGTTGTTAGGTGGGGACGTTCCGTATATGCAAATATTCAGAAATTTATACAATTCCAGCTCACTGTTAATGTTGCTGCTCTTGTAATCAATGTGGTAGCAGCAATATCTTCTGGTGATGTTCCTTTAAACGCAGTACAACTGTTGTGGGTAAACCTCATCATGGATACACTTGGGGCTCTTGCACTCGCTACGGAACCACCAACAGACAACCTTATGCACAGATCACCAGTTGGCCGAAGAGAACCTCTTATTACAAATATAATGTGGAGGAACTTGACAGTACAGGCTCTCTATCAAGTGGTTGTTCTTCTGGTTCTTAATTTTGGTGGTGAAAGTATCCTGAGTAATCAATACTCTAGAACCCAAACCATACAAGTGAAGAATACTCTAATATTCAATACGTTCGTCCTGTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAGGAAATGAATGTGTTCAGGGGAGTGACTAAGAATCGTCTCTTCGTGGGAATTGTTGGAGTCACCTTTGTGCTTCAGATAATCATCATTGAGTTCCTGGGAAAGTTCACGACGACGGTGAGGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGGATTGCGAGTTGGCCTCTTGCTATAATTGGAAAATTGATTCCAGTTCCTAAAACACCATTGTCCCGCTCCTTCAAGAAGCAACTCATGCGATTCAAGAGATCTCGTGGTGTTGCTGCTGCTGCTTCTACATAG 3303 0.422 MHCCLSNLSICIHFPASYQYNTIQYNTIHTISLSLCVYFLELASSNRSMSEMMTSTSRVSTSSSNGLLTVTIADSTTKDNDNAIDDDDDLLVDPDDPFDITQTKNAPPESLKRWRQASFVLNASRRFRYTLDLKKEEEKEEKKSMIRAHAQVIRAALLFRLAGERELVTSSSVTAPTPVGNYGVGLEQLVSMSKDQSVSALQQYGGANNGISGDDADLIERKNEFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFDIVVGEVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVLVLVVLLGRFFSGHTKDLDGNVQFVAGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALAITQVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDSSTMHQEVLSLINEGIAQNTTGNVFVPKDGGETEVTGSPTEKAILSWAMKLGMKFDLLRKASTILHVFPFNSEKKRGGIAVKVFFKDAIDDMAAQSLRCVAIAYRPYELDKVPSKEEDLEQWSLPENDLILLAIVGIKDPCRPGVKEAVRICADAGVKVRMVTGDNLQTAKAIALECGILTSTEEAVEPTIIEGKTFRELSETEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDNLMHRSPVGRREPLITNIMWRNLTVQALYQVVVLLVLNFGGESILSNQYSRTQTIQVKNTLIFNTFVLCQIFNEFNARKPEEMNVFRGVTKNRLFVGIVGVTFVLQIIIIEFLGKFTTTVRLDWKLWLASLCIGIASWPLAIIGKLIPVPKTPLSRSFKKQLMRFKRSRGVAAAAST 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0010 1100 Pfam E1-E2 ATPase 314 514 - -
Lal25g0010 1100 SUPERFAMILY Calcium ATPase, transmembrane domain M 207 1072 IPR023298 -
Lal25g0010 1100 Gene3D - 592 651 IPR023299 GO:0000166
Lal25g0010 1100 Gene3D - 390 563 - -
Lal25g0010 1100 ProSitePatterns E1-E2 ATPases phosphorylation site. 542 548 IPR018303 -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 540 554 - -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Lal25g0010 1100 PRINTS P-type cation-transporting ATPase superfamily signature 833 845 - -
Lal25g0010 1100 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 776 889 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0010 1100 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 473 572 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0010 1100 Pfam haloacid dehalogenase-like hydrolase 537 823 - -
Lal25g0010 1100 SFLD C1.7: P-type atpase like 524 861 - -
Lal25g0010 1100 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 653 1072 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lal25g0010 1100 Gene3D - 821 1074 - -
Lal25g0010 1100 Gene3D - 206 389 - -
Lal25g0010 1100 Pfam Cation transporter/ATPase, N-terminus 207 261 IPR004014 -
Lal25g0010 1100 SUPERFAMILY HAD-like 538 914 IPR036412 -
Lal25g0010 1100 Gene3D - 652 711 IPR023299 GO:0000166
Lal25g0010 1100 PRINTS Sodium/potassium-transporting ATPase signature 279 299 - -
Lal25g0010 1100 PRINTS Sodium/potassium-transporting ATPase signature 533 554 - -
Lal25g0010 1100 SMART Cation_ATPase_N_a_2 188 266 IPR004014 -
Lal25g0010 1100 Gene3D - 108 160 - -
Lal25g0010 1100 SFLD p-type atpase 524 861 IPR044492 -
Lal25g0010 1100 PANTHER CATION TRANSPORTING ATPASE 95 651 - -
Lal25g0010 1100 PANTHER CATION TRANSPORTING ATPASE 653 1087 - -
Lal25g0010 1100 Pfam Ca2+-ATPase N terminal autoinhibitory domain 95 138 IPR024750 GO:0005516
Lal25g0010 1100 SUPERFAMILY Calcium ATPase, transduction domain A 315 409 IPR008250 -
Lal25g0010 1100 PANTHER CALCIUM-TRANSPORTING ATPASE 95 651 - -
Lal25g0010 1100 PANTHER CALCIUM-TRANSPORTING ATPASE 653 1087 - -
Lal25g0010 1100 Pfam Cation transporting ATPase, C-terminus 894 1070 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0010 Lal-Chr25 107556 117094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0010 59 1092 Primary Pumps ATPases AT3G21180 73.327 0.0 1578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0010 K01537 - gmx:100817367 1655.96