Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0007 ATGAACACCATAACCATGTTCTCTAAGTTTCTTCAATTTCACACTACAATTCCCTTTCTCCCACTTCCTCCTTTTACACATCACAACAACAACGACACCAATTCCTTCCTCATATTCAAACACAACTCCCAATTTCAATTCCATTATTATGAAACAAGAAGAAGAAGAAGAAGAAGAAACGGTCACTGTTGTCGTTGTCATGGTTCCTCTGAATCGGAAGTGCAAGAAGCTCGAAAAGCCGTTTCAACATTTCTTCAAGAATTGGGAGTGTCAGAGGAAGATTCGATATCCATCGCGTCAAAGTCGCCTTCTTATTTAAACATGTTGATGGATGGGGTTAAGGATTTGGATCAGTTATCATCCATTATCCAACAACAAGAACAAGAACAAGAACAAGAACAAGAAAACCTCAAAGATAAAATCATTCATATCGCTACTGAGAAAGGTGACAAGGGGAAAGTTGCATATCTAGAAAGTTTAGGCTTCACTCTCTCTTCATCTATGAATGTTGCACGGTATCTATCTGCTGAGACGCTACCATCTCTCATTCATAAGGTTACTTCTATGAAGCTTCTCTTTTTCAATTCTCATTCTCATGATAATCAAGATTTCCTTATCAAAAACATTCGGCGTATGATCCTCTATTTATCCATTCCAATTGATGATGATCTTCAACACACTTTATCCTTCTTTGCTAAGGTTGAAGCAAGACGTGGTGGTCTGAAAATGTTATCTTCCAAAGATTCAGCTTTCAATTATTTAATTGAATCATTTCCTCGTCTACTTTTGTTATCGGTAGATGACCACATGATGCATACCATGGAATTTCTTGAAAATATTGGAATCCCTAGAGTTCACATCTCATATATGATACTGTGTTTTCCTCCCATTCTGCTTTGGAATCTCCGACTCCTCAAAAATAGAGTCCTAGCCCTCAAGGAGATTGATTTGGTGGATGGTGATTATATCAGGTTACTGTTAAATTATCCTTGGGTTCTATCGACAAGCATTCAAGAAAACTATGAGGAGGTCCTTGCCTTTTTTCATACTGAAAATATCCCCAAGACATTGCTTGACCGTGCAATCCAAAGCCAACCTCATTTATTGGCTTGTTCAACTAGCAAGCTGAAGTTGATGGTGGATCAGTTTGCCGAACTAGGAGTTATAAGCAAAAGGTTGGATCGGGTTATTACTAAAAGTCCTCAGCTACTACTACAGAATCTGAAAGACTTCCTTAAGATTGTTCTGTTCTTTGAAAATATGGGTTTCGATGGAGAAAATATTGGGAGAATTCTTGCTCGTTGCCCTGAGATTTTTGCCACCAGCATTAATAAAACTCTGCAGAGGAAAATTGAGTTCCTTTTTGGGATTGGTGTTTCTGAAACTCACCTTGCAAGGGTTATCAGGAAGTATCCAGAGTTACTCGTTTGTGACACTGATAACACTTTACTGCATAGGATTATGTACCTTATGAAGTTAGGGCTTTCAGAGAAAGACATTGCATTTATGGTACGTACATTTTCTCCTCTCCTCGGGTACAGTATAGAGGAGGTTCTGAGGCCAAAAATAGAATTCCTAGTTAATTCAATGGAGAGGCCAGTAAGAGATGTGGTGGGGTACCCTAGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAACCAAGGTATTGGATGCTCAAAGGAAGAAATATTAAGTGCAGCTTAAAGGATATGTTGGGAAAAAATGATGAAGAATTTGCTACTGAATTTATGTGTCCTCTGGCTTCTCATGATAGGTTGTAA 1782 0.381 MNTITMFSKFLQFHTTIPFLPLPPFTHHNNNDTNSFLIFKHNSQFQFHYYETRRRRRRRNGHCCRCHGSSESEVQEARKAVSTFLQELGVSEEDSISIASKSPSYLNMLMDGVKDLDQLSSIIQQQEQEQEQEQENLKDKIIHIATEKGDKGKVAYLESLGFTLSSSMNVARYLSAETLPSLIHKVTSMKLLFFNSHSHDNQDFLIKNIRRMILYLSIPIDDDLQHTLSFFAKVEARRGGLKMLSSKDSAFNYLIESFPRLLLLSVDDHMMHTMEFLENIGIPRVHISYMILCFPPILLWNLRLLKNRVLALKEIDLVDGDYIRLLLNYPWVLSTSIQENYEEVLAFFHTENIPKTLLDRAIQSQPHLLACSTSKLKLMVDQFAELGVISKRLDRVITKSPQLLLQNLKDFLKIVLFFENMGFDGENIGRILARCPEIFATSINKTLQRKIEFLFGIGVSETHLARVIRKYPELLVCDTDNTLLHRIMYLMKLGLSEKDIAFMVRTFSPLLGYSIEEVLRPKIEFLVNSMERPVRDVVGYPRYFSYSLEKKIKPRYWMLKGRNIKCSLKDMLGKNDEEFATEFMCPLASHDRL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0007 593 Gene3D Transcription termination factor 3, mitochondrial 372 588 IPR038538 -
Lal25g0007 593 PANTHER CGI-12 PROTEIN-RELATED 412 584 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 PANTHER CGI-12 PROTEIN-RELATED 44 405 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 412 584 - -
Lal25g0007 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 44 405 - -
Lal25g0007 593 SMART mt_12 465 496 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 429 460 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 288 318 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 394 424 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 501 533 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 323 354 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 534 565 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 SMART mt_12 359 389 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 Coils Coil 116 143 - -
Lal25g0007 593 Pfam mTERF 274 580 IPR003690 GO:0003690|GO:0006355
Lal25g0007 593 Pfam mTERF 75 308 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal25g0007 mTERF 1.3e-90 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0007 K15032 - gmx:100802127 681.789