Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1446 ATGGCTGCCACAGCAACTGCTTCAGTGGGTCCACGTTATGCACCAGCTGACCCGACACTTCCCAAGCCATGGCGGGGTCTTGTGGATGGTAAGACTGGGTATCTTTACTTTTGGAATCCTGAAACCAATGTCACCCAATATGAGAGGCCTTCAAGCTCAGCTGCCCCACCAAAGTCATCTTCAGTGTCTAGTTCTGTCCAGGTTCAACAACATTCATCTCAAGGTATGCACCGTGGTCGCAGTCCAGATTTGAATGATAGGTATGATAGAAATGGCAGCAGAGAGTCTAACACTGAAGCTGGATCACGGAACTATCAGATTTCCAAAGGTGGAGGTTTTAGTTCTCACAATGGGATGCAAGATTCTGGAAATGGTAGTTCCATCAAAGATCATGTGGCATCCGATGCTGGGCCTGAATTATCTCCTGAGGCTTATCGGCGTCGCCATGAAATAACTGTTTCTGGGGATAAGGTGCCTCCACCTATTATATCATTTGGATCGAGTGGCTTACCATCTGAGATTCTAAAAGAGGTACAAAGTGCTGGATTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAGACTGGTTCAGGGAAAACTTTGGGGTATTTAATCCCATCATTTATGCACATCAAGCGTGTTTCTAATAATTCCAAATTAGGCCCCACTGTATTGGTACTGTCTCCAACAAGGGAGCTGGCCACACAAATCCAAGATGAAGCTGTGAAGTTTGGGAAATCATCGAGATTTTCTTGTGCATGTTTGTATGGAGGGGCACCAAAGGGTCCACAATTGAGAGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGGTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCAACAGGTCTCTTACCTTGTGCTCGATGAAGCAGATAGGATGCTGGACATGGGTTTCGAGCCTCAAATTAGGAAGATTGTGAATGAGGTTCCTGCTCGTAGGCAAACTCTCATGTATACAGCAACATGGCCTAAGGAAGTTAGGAAAATTGCAGCTGATTTTATGGTCAATCCTGTCCAGGTCAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAATCCATTACTCAGCATATTGAAGTATTGTCATCAATGGAGAAACAGAGACGACTGGAAACTATTATACGGACCCAGGACCCAGGATCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTCTCACGTCAGTATGGAGCTACTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGACCATGTGTTGAGTCAATTTCGAACTGGGAGGTCCCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGATGTTAAAGATATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACAGGGAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGCGAGTTCCTCCAGAACTCCGTGATATGTCATCCCGGGGTGGTGGGATGAACAGATCCAGAAGATGGGGTTCTGGTGGCTCTGGATATGGTGGAAGGAGCAATGACACAGGATATGGTGGGAGAGGTAGTGATTCAAGTTTTGGAGGTAGGGGTAGTGATTCAGGATATGGTGGGAGAGGTGGTGACTCGAATTATGGAGGTAGGGGTGGGTGGTCTGCTTCTGCAGGCAGTGGTGGAGGCCGTGGTTTTGATTCTGACTCACAGAGGAATGATCGTGGTCGAAGCCCTGACAAGGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGTCCTGACAGGAATGCACCATCTCAAAATTCCAAAATTAGCTTTCATCAAGCAATGATGGAACGTAGTGGAGGAGATGGTGATCGCAACAAGAGCCTTATCTCACCATCCTCCCCTGGTTTTGGCAGATCCACTGGCGATGGAAGAAATGGTGGATCTAATTCTAAGTACAATGGAGAAGAAGAGGAAGGGATGATTGGTAATGAAAAAGGCATGATATAG 2154 0.4591 MAATATASVGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVSSSVQVQQHSSQGMHRGRSPDLNDRYDRNGSRESNTEAGSRNYQISKGGGFSSHNGMQDSGNGSSIKDHVASDAGPELSPEAYRRRHEITVSGDKVPPPIISFGSSGLPSEILKEVQSAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPSFMHIKRVSNNSKLGPTVLVLSPTRELATQIQDEAVKFGKSSRFSCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADFMVNPVQVNIGNVDELVANKSITQHIEVLSSMEKQRRLETIIRTQDPGSKIIIFCSTKKMCDQLARNLSRQYGATAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKVLEGANQRVPPELRDMSSRGGGMNRSRRWGSGGSGYGGRSNDTGYGGRGSDSSFGGRGSDSGYGGRGGDSNYGGRGGWSASAGSGGGRGFDSDSQRNDRGRSPDKGSSWSDRFKNRDRSRSPDRNAPSQNSKISFHQAMMERSGGDGDRNKSLISPSSPGFGRSTGDGRNGGSNSKYNGEEEEGMIGNEKGMI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1446 717 Gene3D - 373 543 IPR027417 -
Lal24g1446 717 Pfam DEAD/DEAH box helicase 187 357 IPR011545 GO:0003676|GO:0005524
Lal24g1446 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 518 IPR027417 -
Lal24g1446 717 CDD WW 21 49 IPR001202 GO:0005515
Lal24g1446 717 MobiDBLite consensus disorder prediction 674 701 - -
Lal24g1446 717 MobiDBLite consensus disorder prediction 616 647 - -
Lal24g1446 717 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Lal24g1446 717 MobiDBLite consensus disorder prediction 97 129 - -
Lal24g1446 717 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Lal24g1446 717 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 635 - -
Lal24g1446 717 CDD SF2_C_DEAD 382 511 - -
Lal24g1446 717 SMART ww_5 19 52 IPR001202 GO:0005515
Lal24g1446 717 MobiDBLite consensus disorder prediction 80 96 - -
Lal24g1446 717 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Lal24g1446 717 SMART helicmild6 422 502 IPR001650 -
Lal24g1446 717 SMART ultradead3 182 385 IPR014001 -
Lal24g1446 717 MobiDBLite consensus disorder prediction 1 25 - -
Lal24g1446 717 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Lal24g1446 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 368 IPR014001 -
Lal24g1446 717 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 314 322 IPR000629 -
Lal24g1446 717 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 118 635 - -
Lal24g1446 717 Gene3D - 15 73 - -
Lal24g1446 717 MobiDBLite consensus disorder prediction 47 139 - -
Lal24g1446 717 Pfam Helicase conserved C-terminal domain 394 502 IPR001650 -
Lal24g1446 717 MobiDBLite consensus disorder prediction 533 717 - -
Lal24g1446 717 Gene3D - 139 372 IPR027417 -
Lal24g1446 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 541 IPR001650 -
Lal24g1446 717 MobiDBLite consensus disorder prediction 47 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1446 Lal-Chr24 15746808 15752874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1446 161 540 Eukaryotic Initiation Factors Gene Family AT3G19760 34.115 2.97e-67 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1446 K12823 - gmx:100816455 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1446 24 15746808 15752874 Lal24g1446 24 15746808 15752874 ECH