Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1445 ATGGAAGAAGATTTGATCTTGATGAACTATATAGCAAATCATGGTGAAGGTGTATGGAACTCCTTAGCCAAATCTGCTGGTCTTAAACGCACCGGAAAGAGTTGCCGGCTCCGGTGGCTGAATTATCTCCGTCCGGATGTTAAAAGAGGGAATATTACACCTGAAGAGCAACTCTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCGAAAATTGCTAAGCATCTTCCAGGAAGAACTGATAATGAGATTAAAAACTTTTGGAGAACTAGGATCCAAAAGTACACTAAGCAAGTAGAGAATTTCCAACAAGAGAGTACTTCTGATCAGACAAATGAATATCATCATCATCAAGAAAGGACTAGTCAAACGTCCACCACCATGGCTCATCATGAGCCTGTGGGAACAACATACTCTCCACCTTCATACCAAGGAACCAGTTTGGATCCAATATTTCCAACTCAGTTCTCCACAATAATCCCTGATCAATCTAGTTGTTATTGGAGCATGGAGGATATCTGGTCAATCTGA 537 0.4153 MEEDLILMNYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYTKQVENFQQESTSDQTNEYHHHQERTSQTSTTMAHHEPVGTTYSPPSYQGTSLDPIFPTQFSTIIPDQSSCYWSMEDIWSI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1445 178 MobiDBLite consensus disorder prediction 123 146 - -
Lal24g1445 178 Gene3D - 1 48 - -
Lal24g1445 178 SUPERFAMILY Homeodomain-like 2 90 IPR009057 -
Lal24g1445 178 Gene3D - 53 95 - -
Lal24g1445 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 43 IPR017930 -
Lal24g1445 178 Pfam Myb-like DNA-binding domain 2 43 IPR001005 -
Lal24g1445 178 Pfam Myb-like DNA-binding domain 49 92 IPR001005 -
Lal24g1445 178 ProSiteProfiles Myb-like domain profile. 44 94 IPR001005 -
Lal24g1445 178 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 178 - -
Lal24g1445 178 CDD SANT 53 92 IPR001005 -
Lal24g1445 178 Coils Coil 87 107 - -
Lal24g1445 178 MobiDBLite consensus disorder prediction 104 146 - -
Lal24g1445 178 SMART sant 2 45 IPR001005 -
Lal24g1445 178 SMART sant 48 96 IPR001005 -
Lal24g1445 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
Lal24g1445 178 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 178 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal24g1445 178 CDD SANT 2 43 IPR001005 -
Lal24g1445 178 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1445 Lal-Chr24 15730599 15734433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1445 1 178 MYB Transcription Factor Family AT3G01530 54.945 2.66e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g1445 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1445 K09422 - gmx:778046 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1445 24 15730599 15734433 Lal24g1445 24 15730599 15734433 ECH
Lal12g1493 12 18149259 18149629 Lal24g1445 24 15730599 15734433 LSH
Lal13g1890 13 18399940 18403593 Lal24g1445 24 15730599 15734433 LSH