Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1432 ATGTTATTATCCGAATCACAAAACCCTAACTCACTCACCGATTCATCGAACAACCACCCTCTCCGAATCGACCTCAATCAGATCCCTTCTCCTTCCACTTTCCTCGAAACCATTGAAGTTGTTCGTTCATATCACCAATACCCTGACCCACCTTCACACCCGGCGGCCCTCCTCCCTCTCGGATCAACCCTCTGCGCCGCCTGCGCCAACCACGGAACCACTGGCCCCCACGCCATTGTCTGTGATGCCTGCGAGCGCGGATTTCATCTCCACTGCGTTGGTGTTCACGGTGGACGCCGCATCCTTGAGTGGCTCTGCGCCGAGTGTGTTGCCGGTGGAGTCAAGAGTAAGCTGTGGCCGTTGGGGGTTAAGTCTAAGCAGCTTCTTGATATCAACGCTTCGCCGCCTAGCGATGTCGAGACTGAAGAGTTGCAGGATTTGAGAAAGCATACTGTGGGTGATAATCTATTTGGCGCCCCAGTTGCATATTCAAATTTGCACAACGGATGTGCTTTTGGATTCCAAAAGGCATCAAGAGCCGTGACACATGCTGTTAGAGTGGGTTCTGAGGATATAAGAAATCATACCGAATCATTGAGTAGAAGCTTTGAGGAGGGTCTTAGAGATTTTATATCCGAAAGGTGTGGCGTGCTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGTGCAGCTCTGAAGTGTATGCAGTTTACCGTGCACCAGATGGGAAGGAATTTGATTCTTTGTATGAAGTAGCTTGTTATTTGGGGGTAATCTCTGGATACAATTCTACGGAATCTGAAATAAGAAATGAGAAGTCAGGTGGTCCTCAACCATCAAGAAAAAGAAAATCAACAAAAATGGCAGCAGCTAATTGTTTTGCAGAAAAGTGGGGAACCTTGATTAATAGTTATTGTGAGCATCCCCCGTTTAATGGGTTAAGTGTTGAATGTGCTGCTACTGGTGGCAATATCCGGAAAGCTACTGAAGCTGAAATTAGAAGAAAAGAGGATGGCCTCTCTAGCCCTGAGCAACCTTCTGATGGACTTCCTCTGCAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAAGTTGATGGTAGACTTTCATATCATGATGTTAACCTTATCTATCCTGTAGGTTATAAATCTTCTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGCGGTGAGTCAGGGCCTATATTTAGGATCAGAAGGTGTTCTTGTTCAAAATATGTTGTTCCGGTTGGGTCAACCATCCTCTCAATGTCGAGTCTTTGTGAACAATTTGTGACTCAAACCAATGAAGAAGGTGAGAGAAAGACTAATGATGACATGGATCATGATGGTGATGAAAGTATTCAGATGTTCCTTTCAGACCCTTGTGTTCCAACAGAAAATGACGTCATGAGTTGTATAGAAAGTTGCTTGAATGCAGCACTTAATACTTGTACATCAGACATACTGCAACCTGTAGCTGGTTCAGTTCAAGATAAAAGTAGAAATTCAATAGCTGATGACTCATGTTTGGTAGATGACATTGGTGAAATTTTGGTGGAAGAGAGGTCATCATCCTCAGCATGGGGAGTTATGTCTCAAAAGTTAGTTAACGCCTGCAAGGATATCTGCAAGCAGAAAGGAAATCTGAAGTTCTATTGTAAACATGTTGAAAATGAAACATGCTTTCATGAATGGGATGCAAGGAACGGAAAAATTCATTCACACGTTTCTTCACTGGATAAATTTTGCGGTTCAATTGGTTCAGTCAGCATACCAGATGTAATTCATGCAGAAAATGATCTGGATAGTCTCTCTGAGGTCTTAGTAAAATGGATGGGGCAAGACAGATTTGGATTAGATGTTGAATTTGTGCAAGAAATATTAGAACAGCTTCATGGTGTCCAAGATTTTTCGCAGTATGAACTTCTAAATAGTAGAAGTAATAGCTCTTCATTTCCAACAGTTGAAAATGGTTTCCTAGTGGTTGAACGGAGAGGTGGATCACAATATCAAGAAGAAGAAGCAGTTCAAGATTTATATAGGAGGCCCAAGAAAGCGAGACCGACTGGAAAATGTGTTAAGGAAAATCGCTGTCCACCACCTCCTGGGAAGCCACTGTGCTCTAGGGTTCCTAATGAACATATTGGTTACATTTTTCAGGCTTGGGAGCTTATAGAGCGCTTTCATGAAATTCTGGACCTGAAAGAACCATTGTTGTTAGATGAGCTAGAGAAGGAACTTATCAACCCATGGTTTGATGGATTGGATTTTGTTGAGAAATCTGAGAGGGAAATGAATGGAAGTCAAGTTTTAGATTTTCCAGGTGATGATGGTAATTGCAGATCCCCAAAGTGTGAACTTGGTCCATCAGGTTCTGTAGAAAGTGCTCATGCATTTATTCAAGTTGAAACAGAAGCAATGAAACAGACAGCTCAAGCTAAGCTTGCGTCTTTTACTTATGCCAGATGCTTTGGTGTTGCTTTGACAAAGACACATAATTCCTTGCTAAGAGTGCTTATAGGTGAACTGCAATCAAAAGTGGCTGCTCTGGTAGATCCAAGTTTTGAATCTGGAGAGACTCGAAGTAGACGGGGAAGAAGGAAAGATATAGATATTGCAACTCCTGCTAAACGAACCAAGCTCAATATGCTTCCCAATAATGAATTGACTTGGCCAGAATTAGCTCGTAGATACATCTTGGCTGTCTTATCAATGGATGGTAACCTGGACTCCGCAGAAAGTACTGCACGCGAAGGTGGTAAAGTATTTCGTTGCTTGCGAGGTGATGGTGGTTTGCTGTGTGGTTCCCTTTCTGGCGTGGCTGGGATTGAAGCAGATGCACTGTTGCTTGCAGACGCAACAAAGAAAATCTTTGGTTCTTTGAGTGAAGACAATAATGTACTTACCATTGAAGAAGAGGAGTCTGATGTGAAGGATGATTCTGAGAATCTTCTGGGCGGTGATGACAGTATTCCTGAATGGGCAAAAGAACTGGAACCTGCTAGAAAACTGCCAACAAATGTTGGAACCCGTATTAGGAGGTGTGTTTATAATGCTCTGGAGAAGAATCCGCCAGAGTGGGCAAAAAAAATTCTGGAGCATTCAATTAGCAAGGAAGTGTACAAGGGCAATGCTTCTGGGCCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTACTGTATCTGGTGAAGGATTGCACCAGAAGCCACCCAAGAAAAGAAGGAAAAAGAAGACTGAAATATCTATTTCTGACATTGTCATGAAACAATGCCGCATTGTATTACTTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAATTTAATGAACTCTTCTGATAATGATGATGAGGGACTTCTTGGATCTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGACCTAAGATTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTGTTGAGGATGTTCGCGAGCTGTGGAACAATGTCCGTGTTGCTTTTGGGGATCAACCCGATTTTGTTGAACTGGCTGAAAATTTATCCCAGAACTTTGAATCGTTGTATAAAGAGGAGGTCGTTGCTTACTCCCAAAAATTTGTAGAGTATGCTAAACTGGGATGCTTAAATGCAGAAATGAGAAAAGAAGTTGACAATTTTATTGCATCAACAAAAGAGATTCCTAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGTTGGTAAGCGTGCAACTGAAGATGTCACAGGACACACACATATTATTTGCAAACGTCCAAGGAAAAGATTCCGTGGAGAAGTTTATTCTCTTTACTTGGAATCCCTGACTCATTTATCAGCTGTAATGGAAGAGAAAGAATATTGGGAGTACAGCGTGGGCGAGAATGGTAGTATGGTCTCTATTCTTTTGTGCTGGATATTTGTGGGTGCACCTTGGTGCAATGGTCAAGTTGCAGCCTTGCCTTGCTACTTGGAGGCCACACACCCCAACATGAGAACTTTCCTTCTAAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATACGCTACCACCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACAGCAGAAATTGCGTGCATTTTATGTTGAGTGGAAAGGTCTGAAAGCTAAAGAAGACATCTTATCCACAAAAGCTGCAAAAATTGATACATGCTTGCTTAATAAAGCTGGAGATGTTGTTCATAAGGAAGGGTTCAAAGCTACGCTCGTATCTCTGACAAACTCTGATACTGGTAGCCAAAGTATGAATTCTGTAGATGTTGAGGGGCAACATAGGAACATCTCTGCAGCAGTGGAGTCTGAATGTATTGATAAATCCACTAGATCTTCTCCATCGCCAAATCACATGGATCGAGAAAGGAACGATGCTGGTGGAGCAGATCATCATATCCTGGGTAACCATCAGAAATGTGAGGGAAGGGACATATCTGCTCTTGTGACATCCCAACCTTACCATGTCGAGCTCAATGCAACCAGGCGTGAACTTTCGACACTACAGGACTCCGTAGCCAGTGTACAATTACAGCTTCTGAAGCTCCCTGTTCGCCGGGAATTTTTGGGTTCTGATTCCATTGGTCAATTGTACTGGGCTTCGGCTCTGCCCAGAGGACGTTCATGTATAGTTGTTGATGCAAGTGATGCACTGTTGCAATGGAGAGGAATGGCATCTAACAGAGACTCTGTAGATAAGTTTTTATTTATGCCGCATTCTGCACTTACTGCCAAGGATAATTATAAGATTATTCAGCCAAGTAATGCTTTGGGCATTCGTTCACCGTGGGTTGCATATGAAACTGATGGAGAAATTGAGGAGCTCTTAAGTTGGCTGAAGGATAAAGATGCTAAAGAAAAAGAACTAAAAGAGTCCATAATGCTGTGGTCAAAATCAAGATTTCATGACTTGATTAATGCTCAGACTGAAGGTCAGGTTGAGGACCAAGGACCATTTTCTATCCCAGGAATCAGAGAGAAAATATTATCCTCTCTTGTTATGAAGGCGACATCATTGCTGGAAAAGAAATATGGTCCTTTCTTTGAGTGGGATACCATTGAGGTGTTGAAGAAGCAGAACAAAAAGGCTAGAAACACTAGTGATTTAAAAATGTACAGGTGTGAATGCTTAGAACCCATTTGGCCTTCTAGGAAACACTGCATATTTTGCCACAAAACTTTTCTGGATGATGTTGACCTGGAGGGGCACAATGGTGGAAAATGTAATGCATGTCTTCTGGCCTTGGAGAAGAATAAGGATAGTAGTGGATCTTTTAAAGGAAGAGGGAACTTGAAATGTGGCACCTCGAGTGAAAAGTTCAGCGGTGATGCTAACACAGCTGGAACTTCAATCAATGGATATTCAACTTCAAATCTTAGCTCAAGTTTGATTAAATTTTCAAATGAAGGATTTTCATGCCCGTTTAATTTAGGAGATATATATTCACAATTTGTAACAAATGATTCCAACAAGGAACTTGTCAGAGAGATAGGTCTTATTGGTTCAGATGGTCACCCATCATTTGTTCCTTCCGTATCTCCTTTTGTTAGCAATTCTACAGTTATGCTATTCACAGCTCAAAATGATGATTGTGTTGTTAATGGTGAGTCCAAAGGTTTAGAAAGCCAGGTTTCTCAAGGAAGTACTGATGGAGTTGGCAGGTTAACTGCAAAGGAAAGCAATAATTTAGGGAAATCGAATACAACTTTGGTAGAACAAAAAGATGGGAAATCCTCTTTTCCTATTCCTGCTTCAGATATGGGGATCGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTAGGAAAAGTTTCACATATTTTGAGGCAACTTAAGATAAGTCTACTTGATATGGATGCTGCACTCCCTAAAGTTGCTCTAAAACCATCGAAGGTGGAGATGCATGGAAGGCAAGCTTGGCATGCATTCGTTAAATCTGCTCAGACGATATATGAGGTTCGAGGTTCTTCCATGAGCAAAACGGTTTTGATTGATACGATGGTTCAAGCAATAATCACATTTGAGGATATGATCAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCGTCATTCTCAGCTGCTGCCAAATCTTCTACTTTGTCTTCCCTTGCGCTTCGCATGTACTCCCTTGATTCAGCCATCATATATGAGAAACTGCCCAGTTCAAGTATGACTGACAGCCCCAAACCTTCCATTGCGGAACTGAACCAACCACCGATCATTGTGGATGCAGATAAATCGAAAGCAACCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGCTGA 6489 0.4233 MLLSESQNPNSLTDSSNNHPLRIDLNQIPSPSTFLETIEVVRSYHQYPDPPSHPAALLPLGSTLCAACANHGTTGPHAIVCDACERGFHLHCVGVHGGRRILEWLCAECVAGGVKSKLWPLGVKSKQLLDINASPPSDVETEELQDLRKHTVGDNLFGAPVAYSNLHNGCAFGFQKASRAVTHAVRVGSEDIRNHTESLSRSFEEGLRDFISERCGVLEEGWRVEFRQSVCSSEVYAVYRAPDGKEFDSLYEVACYLGVISGYNSTESEIRNEKSGGPQPSRKRKSTKMAAANCFAEKWGTLINSYCEHPPFNGLSVECAATGGNIRKATEAEIRRKEDGLSSPEQPSDGLPLQFKDFFVLSLGKVDGRLSYHDVNLIYPVGYKSSWHDKITGSLFTCEVLEGGESGPIFRIRRCSCSKYVVPVGSTILSMSSLCEQFVTQTNEEGERKTNDDMDHDGDESIQMFLSDPCVPTENDVMSCIESCLNAALNTCTSDILQPVAGSVQDKSRNSIADDSCLVDDIGEILVEERSSSSAWGVMSQKLVNACKDICKQKGNLKFYCKHVENETCFHEWDARNGKIHSHVSSLDKFCGSIGSVSIPDVIHAENDLDSLSEVLVKWMGQDRFGLDVEFVQEILEQLHGVQDFSQYELLNSRSNSSSFPTVENGFLVVERRGGSQYQEEEAVQDLYRRPKKARPTGKCVKENRCPPPPGKPLCSRVPNEHIGYIFQAWELIERFHEILDLKEPLLLDELEKELINPWFDGLDFVEKSEREMNGSQVLDFPGDDGNCRSPKCELGPSGSVESAHAFIQVETEAMKQTAQAKLASFTYARCFGVALTKTHNSLLRVLIGELQSKVAALVDPSFESGETRSRRGRRKDIDIATPAKRTKLNMLPNNELTWPELARRYILAVLSMDGNLDSAESTAREGGKVFRCLRGDGGLLCGSLSGVAGIEADALLLADATKKIFGSLSEDNNVLTIEEEESDVKDDSENLLGGDDSIPEWAKELEPARKLPTNVGTRIRRCVYNALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLATVSGEGLHQKPPKKRRKKKTEISISDIVMKQCRIVLLRAAAADDSKVFCNLLGRNLMNSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFVEDVRELWNNVRVAFGDQPDFVELAENLSQNFESLYKEEVVAYSQKFVEYAKLGCLNAEMRKEVDNFIASTKEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVVGKRATEDVTGHTHIICKRPRKRFRGEVYSLYLESLTHLSAVMEEKEYWEYSVGENGSMVSILLCWIFVGAPWCNGQVAALPCYLEATHPNMRTFLLKFLCDELLNSSLIRYHLEQCAELSVELQQKLRAFYVEWKGLKAKEDILSTKAAKIDTCLLNKAGDVVHKEGFKATLVSLTNSDTGSQSMNSVDVEGQHRNISAAVESECIDKSTRSSPSPNHMDRERNDAGGADHHILGNHQKCEGRDISALVTSQPYHVELNATRRELSTLQDSVASVQLQLLKLPVRREFLGSDSIGQLYWASALPRGRSCIVVDASDALLQWRGMASNRDSVDKFLFMPHSALTAKDNYKIIQPSNALGIRSPWVAYETDGEIEELLSWLKDKDAKEKELKESIMLWSKSRFHDLINAQTEGQVEDQGPFSIPGIREKILSSLVMKATSLLEKKYGPFFEWDTIEVLKKQNKKARNTSDLKMYRCECLEPIWPSRKHCIFCHKTFLDDVDLEGHNGGKCNACLLALEKNKDSSGSFKGRGNLKCGTSSEKFSGDANTAGTSINGYSTSNLSSSLIKFSNEGFSCPFNLGDIYSQFVTNDSNKELVREIGLIGSDGHPSFVPSVSPFVSNSTVMLFTAQNDDCVVNGESKGLESQVSQGSTDGVGRLTAKESNNLGKSNTTLVEQKDGKSSFPIPASDMGIDGCCVVPSSSLRPLVGKVSHILRQLKISLLDMDAALPKVALKPSKVEMHGRQAWHAFVKSAQTIYEVRGSSMSKTVLIDTMVQAIITFEDMIKTEYLRNDWWYWSSFSAAAKSSTLSSLALRMYSLDSAIIYEKLPSSSMTDSPKPSIAELNQPPIIVDADKSKATRKSNRKRKESDG 2162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1432 2162 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 208 275 IPR001739 GO:0003677
Lal24g1432 2162 SMART PHD_3 64 110 IPR001965 -
Lal24g1432 2162 SMART PHD_3 1248 1294 IPR001965 -
Lal24g1432 2162 ProSitePatterns Zinc finger PHD-type signature. 1249 1293 IPR019786 -
Lal24g1432 2162 Pfam Methyl-CpG binding domain 209 259 IPR001739 GO:0003677
Lal24g1432 2162 Pfam PHD-finger 1248 1294 IPR019787 -
Lal24g1432 2162 ProSiteProfiles FYR domain FYRN motif profile. 350 403 IPR003888 GO:0005634
Lal24g1432 2162 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 1386 2162 - -
Lal24g1432 2162 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 19 1354 - -
Lal24g1432 2162 PANTHER OS02G0192300 PROTEIN 19 1354 - -
Lal24g1432 2162 PANTHER OS02G0192300 PROTEIN 1386 2162 - -
Lal24g1432 2162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 110 IPR013083 -
Lal24g1432 2162 ProSitePatterns Zinc finger PHD-type signature. 65 109 IPR019786 -
Lal24g1432 2162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1248 1295 IPR013083 -
Lal24g1432 2162 SUPERFAMILY FYVE/PHD zinc finger 62 116 IPR011011 -
Lal24g1432 2162 ProSiteProfiles FYR domain FYRC motif profile. 577 652 IPR003889 GO:0005634
Lal24g1432 2162 CDD Bromodomain 1095 1201 - -
Lal24g1432 2162 ProSiteProfiles Zinc finger PHD-type profile. 1246 1296 IPR019787 -
Lal24g1432 2162 MobiDBLite consensus disorder prediction 1 22 - -
Lal24g1432 2162 SUPERFAMILY Bromodomain 1083 1203 IPR036427 GO:0005515
Lal24g1432 2162 Coils Coil 1553 1573 - -
Lal24g1432 2162 Gene3D - 197 294 - -
Lal24g1432 2162 MobiDBLite consensus disorder prediction 1498 1530 - -
Lal24g1432 2162 MobiDBLite consensus disorder prediction 2145 2162 - -
Lal24g1432 2162 SUPERFAMILY FYVE/PHD zinc finger 1235 1297 IPR011011 -
Lal24g1432 2162 MobiDBLite consensus disorder prediction 2121 2162 - -
Lal24g1432 2162 CDD PHD_SF 65 109 - -
Lal24g1432 2162 Gene3D - 1085 1214 IPR036427 GO:0005515
Lal24g1432 2162 Gene3D - 351 484 - -
Lal24g1432 2162 ProSiteProfiles Zinc finger PHD-type profile. 62 112 IPR019787 -
Lal24g1432 2162 SUPERFAMILY DNA-binding domain 209 287 IPR016177 GO:0003677
Lal24g1432 2162 ProSiteProfiles Bromodomain profile. 1139 1187 IPR001487 GO:0005515
Lal24g1432 2162 MobiDBLite consensus disorder prediction 1509 1530 - -
Lal24g1432 2162 CDD PHD1_Lid2p_like 1248 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1432 Lal-Chr24 15619610 15634873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1432 21 2162 C2H2 Transcription Factor Family AT3G01460 43.046 0.0 1602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal24g1432 MBD 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1432 K22768 - gmx:100791814 2703.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1432 24 15619610 15634873 Lal24g1432 24 15619610 15634873 ECH
Lal12g1509 12 18318856 18332610 Lal24g1432 24 15619610 15634873 LSH
Lal13g1875 13 18191517 18205245 Lal24g1432 24 15619610 15634873 LSH