Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1427 ATGTATGGTAATTGGGTTTTTGAGCATACCCATTTGAAGATGCAATGGATTCATTATCAAATCCACCAAAAAGATGGTTACTTGAACTACTATCCACCACCACCACCACCACCACTACAAGAAACAATGTCTTCTTCAACTTCAACATCATCTTCTAGTACTAGAATAAGTCCTGCAGTTCTTTTCATTATAGTGATTCTGGCTGTTCTCTTTTTCATTTCTGGTATCCTCCACCTGCTTGTTAGATTTCTCATAAAGCATCCATCTTCATCTTCATCTCCTAGATCTAACAACAGGCATGAAATTTCAGCCTCTGATGCTCTCCAAAGACAGCTTCAGCAGCTTTTTCATCTTCATGACTCAGGTTTAGATCAGGCTTTCATTGATGCACTTCCTGTTTTCCACTACAAAGAGATTGTGGGGCCAAAAGAACCATTTGATTGTGCTGTTTGTTTATGTGAGTTTTCTGAAAAGGATAAGCTAAGGTTGTTGCCTATGTGCAGCCATGCTTTTCATATTAGTTGTATAGACACTTGGCTTTTGTCAAACTCAACATGCCCTCTTTGTAGAGGGACACTTCTTACTTCAATTGAGAATCCAATGTTTGATTTTGATGATTTGAGGGAAGAAGATGAGGGGTGCCCCTGTAATGTAGAAAATGGATTTAATAAAGAGAAAAAAGTAGTGGTTGAAGAAAATATAGTGTTGGAGAAAGGGGGTTTCCCTATAAGGCTTGGTAAATTCAGGAAGATGAGTTTAGAGGAAGATGGGGAAAGTGGTGTAGGAGAAACAAGTAGTAGTAATTTGGATGCAAGAAGATGTTACTCTATGGGATCTTACCAATATGTGCTTGGCAATTCAGAACTCAGGGTAGCTTTGAACCATGACAGGAAATGTCGAAATATGAAGTTCGCATCCAAAGGAAATGAACAGCAAGGTGAGAATGAAAAGCTTTCAGTGGAGTGGGATATGGAAGAAGCAAAGAAGATTAGAAGTGTGAGTAAAGGTGAGAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAAAAGGGAAAGTTTTCTAGCTCTAGTGAGGCTCCTCAAATGAGCATGCCAACTTTTCTGAATGCAGAGTTGCCTAGGATGAAGGAAACAGAAGGGGTAATACTGACTCCATGTTATGATGAAATTGGATTTATGATAGCAAATGTTGATTTAATCTTATTGATTGGTTATGCATAG 1221 0.3874 MYGNWVFEHTHLKMQWIHYQIHQKDGYLNYYPPPPPPPLQETMSSSTSTSSSSTRISPAVLFIIVILAVLFFISGILHLLVRFLIKHPSSSSSPRSNNRHEISASDALQRQLQQLFHLHDSGLDQAFIDALPVFHYKEIVGPKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTSIENPMFDFDDLREEDEGCPCNVENGFNKEKKVVVEENIVLEKGGFPIRLGKFRKMSLEEDGESGVGETSSSNLDARRCYSMGSYQYVLGNSELRVALNHDRKCRNMKFASKGNEQQGENEKLSVEWDMEEAKKIRSVSKGESFSVSKIWLWPKKGKFSSSSEAPQMSMPTFLNAELPRMKETEGVILTPCYDEIGFMIANVDLILLIGYA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1427 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 21 359 - -
Lal24g1427 406 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 21 359 - -
Lal24g1427 406 Pfam Ring finger domain 147 190 IPR001841 -
Lal24g1427 406 SMART ring_2 148 189 IPR001841 -
Lal24g1427 406 CDD RING-H2_PA-TM-RING 147 190 - -
Lal24g1427 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Lal24g1427 406 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lal24g1427 406 SUPERFAMILY RING/U-box 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1427 Lal-Chr24 15589158 15595124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1427 45 357 C3H Transcription Factor Family AT2G18650 39.884 1.33e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1427 - - gmx:100787206 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1427 24 15589158 15595124 Lal24g1427 24 15589158 15595124 ECH
Lal16g0550 16 3541169 3542269 Lal24g1427 24 15589158 15595124 ECH