Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1419 ATGGAGATTCAACAAACTCTGAAGCTCTTAGTCCACAGAAAAAACACACACAACAAGAATTCAGATAAACTTTCACAACCTATTACTCCAATGTTCAAATGGAAGCAAATCTTTTTTCACCACACCAAGTCAAAACCCAACAACAAAATTACAGAAATAACCCCAGAAGAATTTCTCTGCCCCATAACCAAAACCCTCATGTCAGATCCTGTTATAGTCTCTTCAGGCCACTCCTTCGATCGAATCACTGTTCAAACATGTCAAAATCTCAACTTTACCCCTCAACTCTTAGATGGTACTACCCCTGATTTCTCCAACGTTATCCCCAACCTTGCCCTCAAATCCGCCATAACCAAATGGTGTATTAACTCCAACAATACTGTCGTTGCACCAGATTCCACCACCACACAAAACATCATACACACAATCATTTCGGAACAGAGTCGTCAGAATCAGAATGTACCAACCCAAGCTGCTACTGTTTCGGAAAAAGATTTGATTTTGGGAATGATGGAAAACCCTAATGTCAATTTCAACCACGCTGAAACCCAAATCCCTAATAGGGCAGTACATTTTTATTCTACTTCAGAGGAATCCATAGCCACCAATGCTTCAGCTTTAACATCAACACCACCTCTTCAATTTTCAACAAAACCTAGTTGCTACTACTCTTACTCTTCAAATTCCTCCTCTGAAATTGAACCCACCACAATCCCCGAATTGGAACAAATCATTTCGAAACTAAAAAACCCCCAAATTTTCATCATCCAAGAGGGTTTAATTTTACTTAGAAAGATTACAAGAACAAAAGAGGAAATTAGGGTTTCTCTCTGCACATCTCAATTGCTCTCTGTTTTAAAATCTCTCATTGTTTCGAAGTACACTAATGTTCAGGTCAACGCTCTTGCTTCAGTGGTCAACCTTTCGTTAGAGAAATTAAACAAGGTGAAGATCGTACGGTCAGGGATTGTTCCACCGTTGATTGAAGTTTTGAGGCTGGGATCCTCTGAATCGCAGGAATACGCATCCGGTGCGCTCTTTAGTTTGGCAATAGAAGATGATAACAAAATGGCGATTGGTGTTCTCGGTGGTTTGCAGCCCTTGCTTCACGCGCTGAGTTCGGAGAGTGAGCGCACGCGCCATGACGCGGCACTAGCACTTTATCATTTGTCCATGGTTCAGAGTAACATGTCAAAGATGGTTAAGTTCGGTTCGGTTCCAGTTTTATTGAGAATGGTTGAGTCAGGTCATATGATAGGTCGGATATTATTGATTTTGTGTAATTTGGGCTCTGGGACGGATGGGCGGGCTGCAATGTTGGATGTGGGTGTGGTTGAGTGTTTGGTGAGATTGTTGAGTGGGTCCGAATTGGGAACCGGGTCAACTCGAGAGAGTTGTGTGAGTGTGATGTATGCGTTGAGTCACGGTGGGTTGAGATTTAAGGCGTTGGCAAAGGCGGCAGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGGTCGGGAGTGAGAGGGCAAGGGAGAAAGTGAGGCGGATTTTGGAGATGATGAGAGGGAAGGAGGAGGAAGAGGAGGATGTGGATTGGGAGGAGTTACTTGACTCCGGGTTAGGTTGTGCCCGACATTGTAGTGAGTTCGATGACTCTAATGCTAACTCGTCCGAATTACTGTTGGATTAA 1674 0.4361 MEIQQTLKLLVHRKNTHNKNSDKLSQPITPMFKWKQIFFHHTKSKPNNKITEITPEEFLCPITKTLMSDPVIVSSGHSFDRITVQTCQNLNFTPQLLDGTTPDFSNVIPNLALKSAITKWCINSNNTVVAPDSTTTQNIIHTIISEQSRQNQNVPTQAATVSEKDLILGMMENPNVNFNHAETQIPNRAVHFYSTSEESIATNASALTSTPPLQFSTKPSCYYSYSSNSSSEIEPTTIPELEQIISKLKNPQIFIIQEGLILLRKITRTKEEIRVSLCTSQLLSVLKSLIVSKYTNVQVNALASVVNLSLEKLNKVKIVRSGIVPPLIEVLRLGSSESQEYASGALFSLAIEDDNKMAIGVLGGLQPLLHALSSESERTRHDAALALYHLSMVQSNMSKMVKFGSVPVLLRMVESGHMIGRILLILCNLGSGTDGRAAMLDVGVVECLVRLLSGSELGTGSTRESCVSVMYALSHGGLRFKALAKAAGVVEVLQKVEKVGSERAREKVRRILEMMRGKEEEEEDVDWEELLDSGLGCARHCSEFDDSNANSSELLLD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1419 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 138 IPR013083 -
Lal24g1419 557 Gene3D - 236 514 IPR011989 -
Lal24g1419 557 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 33 539 - -
Lal24g1419 557 SMART arm_5 311 351 IPR000225 GO:0005515
Lal24g1419 557 SMART arm_5 432 475 IPR000225 GO:0005515
Lal24g1419 557 SMART arm_5 352 392 IPR000225 GO:0005515
Lal24g1419 557 SMART Ubox_2 57 120 IPR003613 GO:0004842|GO:0016567
Lal24g1419 557 Coils Coil 501 521 - -
Lal24g1419 557 ProSiteProfiles U-box domain profile. 53 127 IPR003613 GO:0004842|GO:0016567
Lal24g1419 557 Pfam Armadillo/beta-catenin-like repeat 353 391 IPR000225 GO:0005515
Lal24g1419 557 Pfam U-box domain 55 122 IPR003613 GO:0004842|GO:0016567
Lal24g1419 557 PANTHER U BOX DOMAIN-CONTAINING 33 539 - -
Lal24g1419 557 SUPERFAMILY RING/U-box 48 127 - -
Lal24g1419 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Lal24g1419 557 SUPERFAMILY ARM repeat 240 513 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1419 Lal-Chr24 15524021 15526828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1419 1 534 U-box Gene Family AT5G40140 51.371 1.45e-165 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1419 - - lja:Lj2g3v1020040.1 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1419 24 15524021 15526828 Lal24g1419 24 15524021 15526828 ECH