Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1410 ATGAAAAGAGCAAGGGATGATGTTTTTTCTGGCTCTCAATTCAAACGCCCCTTTGGTTCCTCACGTGCTGATTCCTATGGCCAAAATCAAATACCTGGAGGAGGATTAGGTGGCGGTGGAGGGGGTGGCAGTGGGACAGGAGGCGGAGGAGCAACTACATCGCAGAAACTGACTACCAATGATGCTTTATCCTATTTGAAGGACGTGAAAGACATGTTTCATGACCAAAGAGACAAATATGACTTGTTCCTTGAGGTTATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGAGTTAAGGAGCTATTCAAAGGGCACAATAATTTGATTTTTGGATTTAATACTTTCTTGCCAAAGGGGTATGAGATAACACTTGATGAGGATGATGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCTTGTTTACAAATCATTCTTGGACATCTTGAATATGTACCGCAAAGAGCACAAGGACATTGGTGAGGTTGCTACCCTTTTTAAGGACCATCGGGATTTACTCGACGAGTTTACTAGATTTTTACCAGATACTTCTGGAACACATTCTGCACATCATGCTCCATTTGGTCGAAATTCGATGCATCGCTTTAATGAGCGGAGTTCTTCAGCACCCATGATGCGGCCAATGCAAGTAGACAAGCAGCGTTATCGACGAGACAGGCTTCTTGCTTCTCATGATCGTGATCTGAGTATTGATCACACTGATCTTGATGATGACAAAACAATGATCATGCACAAGGAACAGAGGAAACGCGAGAGCAGGGATAGGAGAATTCGTGACCATGATGAGAGAGAAGCTGATATTGACAACAACAGGGATCTGAACTCCCAACGCTTTCCTGACAAAAAGAAATCTTTCAAAAAGGCTGAAGGTTTTGGTATGGCTACTGACTTTGCCTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGTAGTGCAGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGAACGATTTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGCGAAAATATTGGTAACTTTTCTTCAGATGGATTCCTCGCTGGTGTTATGAGTAAAAAGTCATTGTCTACTGATGCTCATGCATCAAGATCATCAAAGTTGGAGGACAAAGAGAAGGAACAGAAGCGTGAGTTGGATGGAGGTAAAGAGAAGGAAAGATACAGGGACAACAAATACATGTCAAAATCCATTCAAGAGCTTGACCTTAGTGAGTGTAAACGTTGTACTCCCAGCTACCGGCTTCTTCCCTCCGATTATCCATTTCCTAAGGCTAGTCAGTGCTCACTTGTTCTTGTGGAACTCATTTATCCATTTCCTAAGGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTTTTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTATTCTTTCAAGCATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGCTATTAGAGTCCGTGATTTCAGCTACTAAACAGGCAGAGGAATTGTATAATAACATTACTGAAAATAAGATCAATATGGAGAATCTGAGCTGTATTGAAGATCATTTCACCGAGTATTATGATGAATTGACTCTGTCTGGGCTACATATTGCAGTTCTAAATTTAAGGAGCATTGAACGTCTATATGGAGACCATGGTCTTGACGTTATAGAAATATTGCGTAAAAATCCAACTCATTCTCTGCCTGTAATAATTACCCGACTGAAGCAGAGACAAGAGGAGTGGACTAGGTGTCGTTCAGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAACAAGATTCAAAGAACTTGAGCTCAAAATGGCCAGTCACTTTGGTGGCTGAAATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTCGAATATTCTGATACTTCAATTCATGAAGACCTGTATAAACTCATTCAGTACTCATGTGAAGAGCTCTTCTCTAGTAAGGAGTTGTCAAATAAAATTATGAGGCTTTGGAGTACGTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTCATAGGATAGAAAAGGTGGAGGACAGGAAAGCAGACCATAATGTTTGTGATGAAAGTCCTCATGGACACTCTATTTCAATAAGTTCAAGGTTACCAAAATTGGATAAGAATGAAGCTGATGGTAGAACAACTGAAGTAAAGAATGCTCATCGGACTAGTTTAACAGCTAATGATAAAGAAAATGCATCTGTAGGTGGTGAACTGGTTTGTAGAGATGATATTTTGACGGATAAAGGGCAGAAAAATGTAGAAAACAGTGATAAACCCTCCGTATTTAGTAAACAACTTGCCGAACAAGGTGCCAAAAACAATGCATCAATTGCAGTTACAGGAGAAAATAGCCTGAGCAGAATCAACACAGAATTGACTCCAGGTTTTTACGGTCAAAATACTAAGTTTTGTTCATATTTCATGGCTGTGTCATTACTCCATCACGAACTACCGATGTTGATTACTCTAGCCAAATCTCAGAGTGCCAATGCACCTTTGGTGGAGGGATGTGACACCACAGCTCCAGTTCCAGTAGCGAATGGCATCATAAACGAGAGCAGTAATGTTAAAAGCCATGAAGAATCTGTTAGGCCTTCTGCTGGGCTTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCCCCAAATGGTGATTCTGAGGAAGATAACTTTGTTGGGTATGCAGATTCCAATGCACAATCAATAGCCATGTTAAAGCACAGTAACGAGAGAAGGAAATATCAGTCTAGAAATGGAGAGGACGAATGTTGTCCAGATGCAGGAGGTGATAATGATGCAGATGCTGATGACGAGGACAGTGAGAATGTTTCTGAAGCTGGTGAAGATGCTTCAGGCAGTGAGTCTGCTGGTGATGAAGGCTTCCGTGAAGATCATGAGGAGGAGGAGGAAGAGATCGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGATGGAGATGCACAATCTGTTGGAGATGGTTCATCATTGCCATTGTCAGAGAGGTTCCTATCGTCGGTGAAACCTCTCACAAAGCATATATCAGCAGTTTCATTTGTGGAAGAAACGAAGGATTCAAGGATTCTTTATGAAAGGATCTTATCAGCAAAAACATATTCAACGAGTGCAGATATGAAATGGAAAACAAAGGATGCTAGTTCCCCAGATCCTTATTCAAGATTTATGAGTGTGTTGTACAACTTGCTTGATGGATCTTCTGAGAATGCAAAGTTTGAGGATGAATGTCGTGCAATCATTGGGAACCAGTCATATGTGCTATTCACATTGGACAAGTTAATATATAAGTTGGTCAGACAGGTTCTAATGTTGAGACCCTTTCTGCAGCTTCAAACTGTTGCAACCGACGAGGTAGACAGTAAACTTCTCCAATTGTATGAGTATGAGAAGTGTCGGAAACCTGGGAAATTAAATGGTTCAGTTTATCATGCTAATGCGCATTCTTCTACCCCTTCTCGACTATCGATCCAGCTCATGGACAATATGAATGAAAAACCTGAGATGTTTGCTGTATCTATTGATCCAAATTTTTCCTTCTATCTGCACAATGATTTTCTGTCTGTCTCTCCTACCAAAAAGGAACCCCATGGCGTTATACTGCAAAGAAACAAACGTAAGTATGAAGGCTTAGATGAGTTCTCTGCAATTTGTTCCGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCATATGTTCTCGATACACAAGATTTTTTCTTCCGCCCCAGGAGTAAAAGAGGATCATCATCGAGGACCACGTCTTCTTCTTCTTCCCGACATCGGAGGGGGAAAGGTTCCGTAGATTGTTGGCATTCCCGCAATGATTTGTACCCTCGTAGCGAATGA 4257 0.4066 MKRARDDVFSGSQFKRPFGSSRADSYGQNQIPGGGLGGGGGGGSGTGGGGATTSQKLTTNDALSYLKDVKDMFHDQRDKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDDAPPKKTVEFEEAISFVNKIKKRFQNDELVYKSFLDILNMYRKEHKDIGEVATLFKDHRDLLDEFTRFLPDTSGTHSAHHAPFGRNSMHRFNERSSSAPMMRPMQVDKQRYRRDRLLASHDRDLSIDHTDLDDDKTMIMHKEQRKRESRDRRIRDHDEREADIDNNRDLNSQRFPDKKKSFKKAEGFGMATDFASYDDKDTLKSMYSQAFSFCEKVKEKLSSADDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIGNFSSDGFLAGVMSKKSLSTDAHASRSSKLEDKEKEQKRELDGGKEKERYRDNKYMSKSIQELDLSECKRCTPSYRLLPSDYPFPKASQCSLVLVELIYPFPKASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVISATKQAEELYNNITENKINMENLSCIEDHFTEYYDELTLSGLHIAVLNLRSIERLYGDHGLDVIEILRKNPTHSLPVIITRLKQRQEEWTRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSSKWPVTLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLEFEYSDTSIHEDLYKLIQYSCEELFSSKELSNKIMRLWSTFLEPMLGVPSQSHRIEKVEDRKADHNVCDESPHGHSISISSRLPKLDKNEADGRTTEVKNAHRTSLTANDKENASVGGELVCRDDILTDKGQKNVENSDKPSVFSKQLAEQGAKNNASIAVTGENSLSRINTELTPGFYGQNTKFCSYFMAVSLLHHELPMLITLAKSQSANAPLVEGCDTTAPVPVANGIINESSNVKSHEESVRPSAGLCKIEKEEGELSPNGDSEEDNFVGYADSNAQSIAMLKHSNERRKYQSRNGEDECCPDAGGDNDADADDEDSENVSEAGEDASGSESAGDEGFREDHEEEEEEIEHDDVDGKAESEGEADGDAQSVGDGSSLPLSERFLSSVKPLTKHISAVSFVEETKDSRILYERILSAKTYSTSADMKWKTKDASSPDPYSRFMSVLYNLLDGSSENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQVLMLRPFLQLQTVATDEVDSKLLQLYEYEKCRKPGKLNGSVYHANAHSSTPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVSPTKKEPHGVILQRNKRKYEGLDEFSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRSKRGSSSRTTSSSSSRHRRGKGSVDCWHSRNDLYPRSE 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1410 1418 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1027 1041 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 432 455 - -
Lal24g1410 1418 Gene3D Paired amphipathic helix 138 206 IPR036600 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1027 1117 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 268 309 - -
Lal24g1410 1418 Gene3D Paired amphipathic helix 333 406 IPR036600 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 982 997 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 973 1009 - -
Lal24g1410 1418 Pfam C-terminal domain of Sin3a protein 1157 1376 IPR031693 -
Lal24g1410 1418 SUPERFAMILY PAH2 domain 136 204 IPR036600 GO:0006355
Lal24g1410 1418 SMART hdac_interact2seq4b 474 591 IPR013194 -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1398 1418 - -
Lal24g1410 1418 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 506 1394 - -
Lal24g1410 1418 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 498 - -
Lal24g1410 1418 PANTHER SIN3B-RELATED 506 1394 IPR039774 GO:0003714
Lal24g1410 1418 PANTHER SIN3B-RELATED 1 498 IPR039774 GO:0003714
Lal24g1410 1418 Pfam Sin3 family co-repressor 506 585 IPR013194 -
Lal24g1410 1418 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1380 1418 - -
Lal24g1410 1418 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Lal24g1410 1418 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Lal24g1410 1418 Pfam Paired amphipathic helix repeat 163 202 IPR003822 GO:0006355
Lal24g1410 1418 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Lal24g1410 1418 ProSiteProfiles PAH domain profile. 139 205 IPR003822 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1078 1094 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1042 1062 - -
Lal24g1410 1418 SUPERFAMILY PAH2 domain 338 404 IPR036600 GO:0006355
Lal24g1410 1418 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1380 1397 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 1 54 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 430 455 - -
Lal24g1410 1418 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1410 Lal-Chr24 15465409 15476433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1410 42 158 WRKY Transcription Factor Family AT4G12020 49.153 3.95e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal24g1410 Sin3a_C 9.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1410 K11644 - gmx:100812405 1954.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1547 12 18707526 18718024 Lal24g1410 24 15465409 15476433 LSH
Lal13g1865 13 18093864 18100641 Lal24g1410 24 15465409 15476433 LSH