Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1396 ATGAGGACAATAATGGTTGGAAGTGTAACTAAGGTTTGTTTCATTGTGTTGGTCACTTTAGCTATTGTTATTCCATGCTTTGAGGCTGGAATTGCTGAGTTTGATGATTATCTCAAAGCTCAAGCTGAGCAAGCTCGTAAACTCACTCTTGAAACTTATGTGCCAAACCCTGAAGAAATTACTGAGGACCTCAATTTACATGTTCATAAGGCATTGGAAGAGTATGAGAATGAGTTAACAAACAGCACAACAAGAAGGGAACTAAGGCAAGGTAGAAGACATAGAGGACCATGCCAAGCCACTAATCCCATTGATAGATGCTGGAGGTGTCAAGCAAACTGGGCCAATGATCGTTACAGGTTAGCCAAATGTGGCCGCGGGTTCGGGCGTAGAGCCACCGGAGGCCTCGGCGGTCCAATCTACGTTGTTACTGATCCCTCAGATAACAACATGGAAAACCCTTTACCAGGAACTCTCCGTTATGGTGTAACAAGAAACGGTTCATTGTGGATCATATTCAAAACTAGCATGGTTATCACTTTGCAACAAGAATTGATGGTTTCTTCAGATAAGACAATTGATGGTCGTGGTGCTAATGTTCAGATTAAGGGTGGTGGTGGAATCACCATGCAATTTGTGAACAATGTTATTGTTCATAATCTTAGGGTTTCTAAGATTGTGGCTAAGAAAGGTGGCATGATTAGGGATTCAGTTGATCATGTTGGGTTTAGAACAAGGAGTGATGGTGATGCTATCTCTATTTATCAATCATCAAACATTTGGGTTGATCATCTTTCTTTATCAGAAAGTGAAGATGGTCTTGTTGATGTTATTCAAGGTTCCACTGGCATCACAATCTCAAATTGTCACATGACCAAGCATAACGATGTGATGCTGTTAGGAGCTAGTGATAGTTTCAGTGGTGACAAGATCATGCAAGTAACAGTGGCATTCAACCACTTTGGACAAGGATTGATTCAAAGAATGCCAAGACTAAGATGGGGTTTTGTACATGTTGTGAACAATGACTACACTCATTGGCTCATGTATGCAATTGGTGGTAGTTCAGGTCCAACAGTTCTAAGTCAAGGAAATCGTTTCATAGCTCCAAACAATGATGCTGCAAAAGAGATAACACATAGAGATTATGCATCACCAGATGTGTGGAAAAAATGGCAATGGACTTCAGATCAAGATTATTTCATGAATGGTGCAACATTTATTCAAACTGGTAATAAAGTTACAAATCTTCCATATGGGAAAAAGTTTATAATGAAACCTAGACATGGAATTTATGCAAATAGGCTTACTAGATGGGCTGGTGCACTTCCTTGCATTGCAGGCATGCCTTGCTAG 1356 0.4034 MRTIMVGSVTKVCFIVLVTLAIVIPCFEAGIAEFDDYLKAQAEQARKLTLETYVPNPEEITEDLNLHVHKALEEYENELTNSTTRRELRQGRRHRGPCQATNPIDRCWRCQANWANDRYRLAKCGRGFGRRATGGLGGPIYVVTDPSDNNMENPLPGTLRYGVTRNGSLWIIFKTSMVITLQQELMVSSDKTIDGRGANVQIKGGGGITMQFVNNVIVHNLRVSKIVAKKGGMIRDSVDHVGFRTRSDGDAISIYQSSNIWVDHLSLSESEDGLVDVIQGSTGITISNCHMTKHNDVMLLGASDSFSGDKIMQVTVAFNHFGQGLIQRMPRLRWGFVHVVNNDYTHWLMYAIGGSSGPTVLSQGNRFIAPNNDAAKEITHRDYASPDVWKKWQWTSDQDYFMNGATFIQTGNKVTNLPYGKKFIMKPRHGIYANRLTRWAGALPCIAGMPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1396 451 PANTHER PECTATE LYASE 9 451 - -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Lal24g1396 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Lal24g1396 451 Pfam Pectate lyase, N terminus 31 88 IPR007524 GO:0030570
Lal24g1396 451 Gene3D - 101 444 IPR012334 -
Lal24g1396 451 SUPERFAMILY Pectin lyase-like 91 444 IPR011050 -
Lal24g1396 451 Pfam Pectate lyase 184 367 IPR002022 -
Lal24g1396 451 PANTHER PECTATE LYASE 18-RELATED 9 451 IPR045032 GO:0030570
Lal24g1396 451 SMART amb_all 176 373 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1396 Lal-Chr24 15344449 15346195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1396 9 451 Polysaccharide Lyase AT5G15110 51.797 1.50e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1396 K01728 - gmx:100810615 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1396 24 15344449 15346195 Lal14g1922 14 18499005 18500855 ECH
Lal24g1396 24 15344449 15346195 Lal24g1396 24 15344449 15346195 ECH
Lal6g0867 6 5898245 5900861 Lal24g1396 24 15344449 15346195 ECH