Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1387 ATGTCTAGCAGAAAGTCAAGGCAACAATCAACAGGGTCAACAAGAATATCTGATGATCAAATCATTGATCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTAACCATAGGCGCTCTGATAAGGTATCAGCTTCTAAGGTCCTACAAGAAACCTGCAACTATATAAGAAACTTACACAGAGAGGTTGATGACTTAAGTGAAAGGCTATCTCAGTTGTTGAACACAATTGATTCTAATAGTGCTGAGGCTTCTATCATTAGGAGCCTAATTAACCAATAA 282 0.3794 MSSRKSRQQSTGSTRISDDQIIDLVSKLRQLVPEINHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLNTIDSNSAEASIIRSLINQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1387 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lal24g1387 93 CDD bHLH_AtPRE_like 10 76 - -
Lal24g1387 93 Gene3D - 1 89 IPR036638 GO:0046983
Lal24g1387 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 81 IPR036638 GO:0046983
Lal24g1387 93 Coils Coil 56 83 - -
Lal24g1387 93 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Lal24g1387 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lal24g1387 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1387 Lal-Chr24 15272036 15273985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1387 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 4.10e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g1387 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1387 - - gmx:100796852 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1387 24 15272036 15273985 Lal14g1919 14 18474373 18475557 ECH
Lal24g1387 24 15272036 15273985 Lal24g1387 24 15272036 15273985 ECH
Lal6g0855 6 5793642 5795462 Lal24g1387 24 15272036 15273985 ECH
Lal22g0769 22 5526317 5529125 Lal24g1387 24 15272036 15273985 ECH
Lal12g1447 12 17711612 17713767 Lal24g1387 24 15272036 15273985 LSH
Lal24g1387 24 15272036 15273985 Lal6g0855 6 5793642 5795462 PCT
Lal6g0855 6 5793642 5795462 Lal24g1387 24 15272036 15273985 PCT