Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1376 ATGGAGTCAATGACTACTGGCACAAGTACTCCTACAACTGAAAAATCTTCGGATCCTGAACCCGAAATACCGACCCGGATCCAACAACCACCCGCGGCGGTTACTATTAAACCTTTGTCTTTTTCCAACGGTGTTTTGAAGCGGCACCACCACCAAATTGTTAACGCCACCGCCAACGTGGCAGCAACGGCGGTTACTTACAAAGAATGTTTGAAGAATCACGCAGCTAGCTTAGGTGGTCACGCTGTTGATGGTTGTGGCGAGTTCATGCCTTCACCAACCGTCACCGCCGGCGACCCAGCTTCAATAAAATGCGCCGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGAGCCAGATGAGCCACCGATTTCCACCACAACCCATGTCATCGAATACCAACCTCACCACCGTCACCTCCCACCTCCTCCGCCGCCGGCTTTCCAACCACCACCTTCCCGGAGCCCGAATTCTTCTTCTCCGCCGCCGATCTCCTCTTCCTACTACCCCTCTGCCCCACACATGCTACTAGCTCTTTCCGGCGGTGCAGGGCTATCAGTACCTCCTGAATCCACCGCAGCTCCGGCTAACATCGCCGGAATCGGTTCTGCTGCATCTCCTCGGAAACGGTTTCGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGCATGATTTTGCTGAACGTGTTGGGTGGAAGATGCAGAAAAAAGATGAAGATTTGGTTATGGAATTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTAAAAGTTTGGATGCATAACAATAAGAACACTTTCGGAAAAAAAGATGTTGTTGCTCTTGTTACTACTACAACAAATAATAATACTAATAATGCATCAAACGGTGTCGTTCTTGGAAGTGGAAGTGAGAATGTTCTGGAACAACCTCATAATAATGATAGTGCAAATGTTGGTAGTGGTACTAATGGCTCTTCTTCTTCTTGA 969 0.485 MESMTTGTSTPTTEKSSDPEPEIPTRIQQPPAAVTIKPLSFSNGVLKRHHHQIVNATANVAATAVTYKECLKNHAASLGGHAVDGCGEFMPSPTVTAGDPASIKCAACGCHRNFHRREPDEPPISTTTHVIEYQPHHRHLPPPPPPAFQPPPSRSPNSSSPPPISSSYYPSAPHMLLALSGGAGLSVPPESTAAPANIAGIGSAASPRKRFRTKFSQEQKEKMHDFAERVGWKMQKKDEDLVMEFCNEVGVDRSVLKVWMHNNKNTFGKKDVVALVTTTTNNNTNNASNGVVLGSGSENVLEQPHNNDSANVGSGTNGSSSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1376 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 290 - -
Lal24g1376 322 SUPERFAMILY Homeodomain-like 199 269 IPR009057 -
Lal24g1376 322 MobiDBLite consensus disorder prediction 137 159 - -
Lal24g1376 322 Gene3D - 197 268 - -
Lal24g1376 322 MobiDBLite consensus disorder prediction 1 28 - -
Lal24g1376 322 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 118 IPR006456 -
Lal24g1376 322 MobiDBLite consensus disorder prediction 1 18 - -
Lal24g1376 322 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 290 - -
Lal24g1376 322 MobiDBLite consensus disorder prediction 282 322 - -
Lal24g1376 322 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Lal24g1376 322 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Lal24g1376 322 MobiDBLite consensus disorder prediction 135 167 - -
Lal24g1376 322 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 265 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1376 Lal-Chr24 15067582 15068550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1376 1 264 ZF-HD Transcription Factor Family AT5G15210 53.030 3.81e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal24g1376 ZF-HD_dimer 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1376 - - gmx:100786999 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1441 12 17618315 17619298 Lal24g1376 24 15067582 15068550 LSH