Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1365 ATGGAAGGAACCTTAGGAGTGAGAAAAGGTGCATGGAGCAACTTGGAAGATAATCTTCTAAAGGCATGTGTTCAACAATATGGGGAAGGGAAATGGCATCTTGTGCCTAAACGTGCAGGCTTGAATAGATGTCGCAAAAGTTGTCGATTGAGGTGGTTGAATTATCTAAATCCAAATATCAAACGAGGAGAGTTCAAAAACGATGAAATTGATTTGATTTTAAGATTGCATAAACTTTTGGGAAACAGATGGTCCCTTATTGCCGGAAGACTTCCTGAAAGAACTCCAAATGATGTGAAAAACTATTGGAATTCTTACATTAAGAAGAAGTTATCCTCTAATAAGGAAGATGTTAATGCAAGGCCAAAGGAAAGAGTCATTGAACCTCACATTGTGATAAAGCCTCAACCTAGAACTATTTCAAGAACTTCACCATGGAAAGTGATTAAGGAAGATGAAAGTGGAAAAAAAAAGTGCATTGTTACTAGTGAAACATGTGCTGCTTCTTCATTAGAGTGCAATATTAATTGGTTAGGAACATTTTTCGAAGATAATGGAAGTTTTGATGAGAATGTTGGAACTTCAAAAGAGAATGATACATGTTTATTAGGTGAACAAGATGTTACACCTCTTGAAGATTTTAATTTGGATAAGGAGCATTTTTCATTAACAACAACAGAAATTGAGGACTTTCTTAGAGAAGATCAAAGTTGGAGTGATGTTGTTGATTTAAAA 735 0.351 MEGTLGVRKGAWSNLEDNLLKACVQQYGEGKWHLVPKRAGLNRCRKSCRLRWLNYLNPNIKRGEFKNDEIDLILRLHKLLGNRWSLIAGRLPERTPNDVKNYWNSYIKKKLSSNKEDVNARPKERVIEPHIVIKPQPRTISRTSPWKVIKEDESGKKKCIVTSETCAASSLECNINWLGTFFEDNGSFDENVGTSKENDTCLLGEQDVTPLEDFNLDKEHFSLTTTEIEDFLREDQSWSDVVDLK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1365 245 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Lal24g1365 245 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Lal24g1365 245 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 160 - -
Lal24g1365 245 CDD SANT 64 107 IPR001005 -
Lal24g1365 245 CDD SANT 11 56 IPR001005 -
Lal24g1365 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Lal24g1365 245 Gene3D - 64 128 - -
Lal24g1365 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Lal24g1365 245 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Lal24g1365 245 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Lal24g1365 245 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Lal24g1365 245 Gene3D - 9 61 - -
Lal24g1365 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 160 - -
Lal24g1365 245 SMART sant 8 58 IPR001005 -
Lal24g1365 245 SMART sant 61 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1365 Lal-Chr24 14949936 14951978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1365 2 141 MYB Transcription Factor Family AT1G66370 57.823 9.36e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g1365 Myb_DNA-binding 9.4e-15 CL0123