LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal24g1352	ATGTCTTCTTCAAAACCCCAACGAACTCCTCAAGAAGTTGAAGACATAATCATCAGAAAAATCTTCCTCGTTTCAATCACTCCTCTTCCAATTAACAACACCGATTCTCGTTTAGTATACTTGGAATTAACCGCTGCTGAAATTCTCAGCGAAGGTCACAATCTCATTCTCTCTCGCGATTTCATGGAAAGGGTTTTAATCGATCGAATCTCCGGCGATTTCTCCACCACCGCCGCCGCCGCCGAATCCACCTTCCACTACCTCCTTGGTTGCTACAACCGTGCTCATGATGAATCAAGGAAGATCGTTAACATGAGAGATAAGAATCTTAGGTCAGAGATTGAGGTAGTTGTGAAACAAGCCAAGAGACTCTGTGTTTCGTATTGTAGGATTCATCTGGCTAATCCTGAACTGTTTTCGAGCGGGAATTTGAGTTCAGGTGGTGCTAGTGGTTCCCCGTTGTTGCCGCTGATTTTCGCCGAGGTTGGTGGTGGAAGTATTGATGGATTTGGCACTGGTGGAGGAGTTAAGGCTCCGCCGGGGTTTTTGGAAGAGTTTTTTAGGGAATCGGATTTTGATAGCTTGGACCCGATTTTGAAAGGGTTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTTTCAGCTCTTGGGAATTTCCAAGATTCTTTGAGGGCTTTAATTTATTTGGTTAGGTTTCCAATCGGCGCGAAATCACTTGTGAGCCATGATTGGTGGATTCCTAAAGGTGTTTATATGAATGGGCGTGCCATTGAGGTTACAAGCATCTTAGGACCCTTTTTTCACATCAGTGCCCTTCCTGATCAAACCATTTTCAAGAGCCAGCCTGACATAGGGCAGCAGTGCTTTTCTGATGCATCTACTCGACGCCCAGCTGATTTGTTATCTTCATTCTCCACAATCAAAACTGTTATGAATAGCTTATATGATGGCCTGGCTGAAGTTCTCCTCACTCTTCTTAAAAGTACAGATACTCGTGAAAGTGCACTTGAGTTTCTTGCGGCAGTGATCAATATAAATGCTTCTAGGGCTCATATACAGGTTGATCCTATAGCTTGTGCGAGTTCTGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTCTGTGAGCCATTTTTAAATGCAAATTTAACTAAAAGGGATAAAATTGATGCAAAATATGTACACTACTCAAATCGTTTGAAGCTAAGTGAGTTGACTGCTCTTCATGCATCATCAGAAGAAATTACTGAGTGGCTTAATAGTAATAAACCAGCTAAGGCTGGGGGAATCAATCAATCTAGTGATGGTCAGAAACGCTTGCAACAATCACAAGAAGCCACTAGTTCTGGTAGTAATAATGCTTCTGAGGTTTCGAATGAAAATGCAGTACATGGTGAAAGGACGAAATATACATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCTTTTTCGGACTTCAAACACTTAGCTCAGGATATATCAAGGTCTGAAGATGCTCTTTCCACACTTAAAGCCATGCGGGATCAGTCACCATCTCCTCAGTTAGAATTAGATATATCTCGGCTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAGCTTTGCTATGAAGCTCAGATATTAAGGGATAACACTTTCATTCAGAATGCACTTTCCTTCTATCGCTTGATGATTGTTTGGTTGGCTGGCTTGGTTGATGGGTTTAAGATGCCCTTACCACCAACTTGCCCAATGACATTTGCCACCATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTTTGATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTCGTGCTGGATGAGTTTATGAACTTCATAATCATGTTCATGGGCAGCCCTGAATATATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTCTTAAATTGCTGGATGCCTCGTAGGAGCGGCTCGTCTGCTACAGCTACTCTATTCGAAGGGCACCAGCTTTCACTGGAGTATCTTGTGAGGAATCTTCTTAAACTTTATGTGGACATTGAGTTCACAGGTTCTCACACACAGTTCTATGACAAGTTTAATATTCGTCATAATATTGCCGAACTCCTTGAATACCTATGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAAGAAGAAAAGGGTGTCTATCTGAACTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTAAACAAAATTCTCGAGCTAAAAGAATTGGAGGCTGAAATGTCTAATACGGCTGAATGGGAGCGGCGGACAGTTCAAGAGAGACAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTAGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGTTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAACTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAGAAATATGAGTTTCGTCCAAAACATTTGCTGAAACAGATCGTGCACATTTATGTTCATCTGGCTAGAGGTGATACGAATTCCATCTTCCCAGCTGCCATCTCAAGGGATGGTCGATCATACAATGATCAGTTGTTCAGTGCCGCAGCAGATGTCCTTCGTAGAATAGGCGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCAAAAGTTGCAGCTTCAGAGGCCATGGATGCTGAAGCTACTCTGGGAGAAATACCAGATGAATTCCTTGACCCAATTCAATACACATTGATGAAGGATCCAGTTATTTTACCTTCTTCAAGGATCACAGTTGATCGTCCCGTCATTCAGAGGCATCTTCTCAGTGATAGTTCTGATCCATTCAACCGATCTCATCTCACGGCGGACATGCTGATTCCCGACGATGAACTAAAAGCAAGAATTGAGGAGTTCATAAGGTCCCAGGAAATGAAGAAACATAATGAAGGTCTGAACATACAGAGTAGTACCAAGGATGCAATTCAGACCACCTATGGTGACATGTTGATTGATTAG	3132	0.4205	MSSSKPQRTPQEVEDIIIRKIFLVSITPLPINNTDSRLVYLELTAAEILSEGHNLILSRDFMERVLIDRISGDFSTTAAAAESTFHYLLGCYNRAHDESRKIVNMRDKNLRSEIEVVVKQAKRLCVSYCRIHLANPELFSSGNLSSGGASGSPLLPLIFAEVGGGSIDGFGTGGGVKAPPGFLEEFFRESDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALIYLVRFPIGAKSLVSHDWWIPKGVYMNGRAIEVTSILGPFFHISALPDQTIFKSQPDIGQQCFSDASTRRPADLLSSFSTIKTVMNSLYDGLAEVLLTLLKSTDTRESALEFLAAVININASRAHIQVDPIACASSGMFVNLSAVMLRLCEPFLNANLTKRDKIDAKYVHYSNRLKLSELTALHASSEEITEWLNSNKPAKAGGINQSSDGQKRLQQSQEATSSGSNNASEVSNENAVHGERTKYTFICECFFMTARVLNLGLLKAFSDFKHLAQDISRSEDALSTLKAMRDQSPSPQLELDISRLEKEMELYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLAGLVDGFKMPLPPTCPMTFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPEYIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRTVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISRDGRSYNDQLFSAAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDDELKARIEEFIRSQEMKKHNEGLNIQSSTKDAIQTTYGDMLID	1043

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal24g1352	1043	SMART	Ubox_2	947	1010	IPR003613	GO:0004842\|GO:0016567
	Lal24g1352	1043	MobiDBLite	consensus disorder prediction	427	462	-	-
	Lal24g1352	1043	PANTHER	UBIQUITINATION FACTOR E4	1	1019	IPR045132	GO:0000151\|GO:0030433\|GO:0034450
	Lal24g1352	1043	SUPERFAMILY	RING/U-box	936	1016	-	-
	Lal24g1352	1043	Pfam	Ubiquitin elongating factor core	263	927	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Lal24g1352	1043	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	943	1022	IPR013083	-
	Lal24g1352	1043	PANTHER	-	1	1019	-	-
	Lal24g1352	1043	Coils	Coil	522	549	-	-
	Lal24g1352	1043	ProSiteProfiles	U-box domain profile.	943	1017	IPR003613	GO:0004842\|GO:0016567
	Lal24g1352	1043	Pfam	U-box domain	944	1015	IPR003613	GO:0004842\|GO:0016567
	Lal24g1352	1043	CDD	RING-Ubox_UBE4A	946	1014	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal24g1352	1	1043	U-box Gene Family	AT5G15400	76.236	0.0	1647

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal24g1352	K10597		-	gmx:100806175	1735.31

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal24g1352	24	14790811	14800996	Lal24g1352	24	14790811	14800996	ECH