Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1347 ATGGCAACTGCAAAGACAGTGAAAGATGTCTCACCTCACGAGTTCGTCAAGGCTTATTCCTCTCACCTCAAGCGTTCTGGAAAGATCGAGCTTCCAGAGTGGACAGATATTGTGAAAACTGCCAAGTTTAAGGAGCTGGCTCCTTATGACCCTGACTGGTATTACATTAGGGCTGGTGATCTAAGGAAGTTCAACTTTGTTTACACAGCGTCAATGGCAAGAAAGATCTACTTGAGGGGTGGCCTCGGCGTTGGCGCTTTTAGGAGGATATATGGTGGAAGCAAGAGTAATGGAAGCCGTCCCTCACATTTCTGCAAGAGCAGTGGTGGTATTGCAAGACACATCCTGCAACAGTTGGAAATCAACAAAATTGTTGAGATCGATCCCAAAGGAGGAAGGAGAATCACTTCTAATGGTAGAAGGGATCTTGATCAGGTTGCTGGGCGAATTGTGATTGCTCCTTGA 465 0.4624 MATAKTVKDVSPHEFVKAYSSHLKRSGKIELPEWTDIVKTAKFKELAPYDPDWYYIRAGDLRKFNFVYTASMARKIYLRGGLGVGAFRRIYGGSKSNGSRPSHFCKSSGGIARHILQQLEINKIVEIDPKGGRRITSNGRRDLDQVAGRIVIAP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1347 154 SUPERFAMILY "Winged helix" DNA-binding domain 6 151 IPR036390 -
Lal24g1347 154 Gene3D - 1 153 IPR036388 -
Lal24g1347 154 ProSitePatterns Ribosomal protein S19e signature. 101 120 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lal24g1347 154 Pfam Ribosomal protein S19e 6 151 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lal24g1347 154 PANTHER 40S RIBOSOMAL PROTEIN S19 3 152 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lal24g1347 154 SMART Ribosomal_S19e_2 6 153 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lal24g1347 154 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1347 Lal-Chr24 14759712 14761917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1347 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 80.519 2.02e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1347 K02966 - fve:101297360 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1415 12 17327161 17329083 Lal24g1347 24 14759712 14761917 LSH
Lal13g1777 13 17307438 17309227 Lal24g1347 24 14759712 14761917 LSH