Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1331 ATGTCTATATACCACAAAAATAGAAAAAATAGTAGAGAAGAGAAAATGGGAAGAGGAAAAGTTGAAGTGAAGCAGATCGAGAACAAAATAAGTCGTCAAGTAACGTTTTCAAAGAGAAGATCTGGGTTGAGGAAGAAAGCACATGAAATTTCTGTGCTTTGTGATGCTCAAGTTGCATTCATTGTCTTCAACAACAAAGGAAAACTTTTTGAGTTTTCTTCTGAATCCAGCATGAAAATCATCCTGGAAAGGTATGAGAGACATGCCCATGAAGCACAACTTGATGGTGCTAATAATGAATCACAGGGAAACTTGTCCTTGGATTGCTTCAAGCTCAAGAACAAAGTTGAAGTATTGGAGAGGAATTTAAGAAACTATGTGGGACATGATTTAGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCAACAACTTGACATGGCTCTAAAGCGCATCAGAACAAGAAAGAACCAAGTTATAAATGATTCTATATCTGAGCTGCAGAAAAAGGCAAGGCTATTGCAAGAGCAAAACAACAATATAGCAAATAAGATTAAAGATCAAGAGAAGATAGTTGGTGAAAGTCAACAATGTTGGCCACAAACCCTTGACCCAAATTCTTCAACCTTCAACTTATGTCCTCCCAATTTACAATCACCACAAAGATTGATTATAAAAAGTTTCAAAAATAGTGCAATGGGTCTTTACAAGCAAGTGAATCATGATTGGAGCAAATGGCTGAAACTAGAACTGTTCCTAGTAGCATTACTCTGA 777 0.3694 MSIYHKNRKNSREEKMGRGKVEVKQIENKISRQVTFSKRRSGLRKKAHEISVLCDAQVAFIVFNNKGKLFEFSSESSMKIILERYERHAHEAQLDGANNESQGNLSLDCFKLKNKVEVLERNLRNYVGHDLDPLSLRELQSLEQQLDMALKRIRTRKNQVINDSISELQKKARLLQEQNNNIANKIKDQEKIVGESQQCWPQTLDPNSSTFNLCPPNLQSPQRLIIKSFKNSAMGLYKQVNHDWSKWLKLELFLVALL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1331 258 Coils Coil 139 192 - -
Lal24g1331 258 CDD MADS_MEF2_like 17 93 IPR033896 GO:0000977|GO:0045944
Lal24g1331 258 Pfam K-box region 101 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal24g1331 258 PANTHER MADS BOX PROTEIN 16 222 - -
Lal24g1331 258 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 16 222 - -
Lal24g1331 258 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal24g1331 258 MobiDBLite consensus disorder prediction 1 21 - -
Lal24g1331 258 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Lal24g1331 258 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lal24g1331 258 SUPERFAMILY SRF-like 17 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1331 Lal-Chr24 14628930 14637855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1331 16 199 MADS-box Gene Family AT1G26310 56.915 5.35e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal24g1331 K-box 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1331 K09264 - gmx:100787971 278.485