Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1330 ATGGGAAGGGGAAGAGTGGAGTTGAAAAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGGAATGGACTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTTATCATCTTCTCTACTCGTGGCAAGCTTTATGAATTTTGTAGCTGCACTTCTGGCATGCTGAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAACAAACCTTCCAAAGAGCTTGAGAGTAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGGTTTGAGTCTCTTCAAAGAGCCCAGAGAAATCTTCTAGGTGAAGACTTAGGGCCATTAAATACCAAAGATCTTGAGCAGCTTGAACGGCAACTAGATTCATCTCTCAAACATGTCAGATCCACTAAGACCCAATTCATGCTGGACCAGTTATCTGATCTTCAAAACAAGGAACATATGCTGGTAGAAGCAAACAGAGGTTTGACCATGAAGCTGGAAGAAATTAATTCAAGAAACCAATATAGACAATGGGAAGATGCTGAACAAAGTATGCAATATGGTGCACAAAATGCTCACTCTCAAGGCTTCTTCCAACCATTGGAATGCAATCCAACATTGCAGATAGGGTACAATTCTGTAGCCTCAGATCAGCTAAATGCAGCAACTCAAGGTCAACAAGTGAATGGGTTTATACCTGGGTGGATGCTATGA 732 0.4126 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSCTSGMLKTLERYQKCSYGAVEVNKPSKELESSYREYLKLKARFESLQRAQRNLLGEDLGPLNTKDLEQLERQLDSSLKHVRSTKTQFMLDQLSDLQNKEHMLVEANRGLTMKLEEINSRNQYRQWEDAEQSMQYGAQNAHSQGFFQPLECNPTLQIGYNSVASDQLNAATQGQQVNGFIPGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1330 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lal24g1330 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal24g1330 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Lal24g1330 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal24g1330 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Lal24g1330 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lal24g1330 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lal24g1330 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal24g1330 243 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1330 Lal-Chr24 14613328 14619689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1330 1 243 MADS-box Gene Family AT5G15800 70.722 4.86e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal24g1330 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1330 K09264 - gmx:100785322 427.172