Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1326 ATGAACAATTGCTATGCCGGCTACAATTGCGGTCGCAATATGGTTTCAGTGACTCTTAAAACCTTCACAAATCGGGAAGCTTATGATCCACTTGACCCAAATGGAAATATCACAATCAAATGGGATATTAAGAGCTGGGATCCTGATGGTTATCTTGCTGTTGTTACAATTAACAACTTCCAACAATATCGTCATATCTCAGCGCCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAAGAGGTAATATGGAGCATGGTCGGAGGGCAGGCTACTGAACAAGGGGATTGTTCGAAATTTAAGGGGAACACTCCACATTGCTGTAAAAAGGACCCGACCATCGTAGATTTACTTCCTGGAACACCTTACAATCAACAAATTTCAAATTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAAGATCCAATCAACGCAGTTGCAGCATTTCAACTCAGTGTAGGTAGAGCTGGAACCACAAATAAAACAGTCAAATTGCCGAAAAACTTCACCTTGAAAGCACCAGGACCAGGTTATACTTGTGGGCCAGCGAAGATTGTGAAACCAACTCAATTCATAACAGGAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACGTGCACATATTCACAATTTCTAGCTCAGAAAACTCCCACTTGCTGTGTCTCCCTCTCATCCTTTTATAATGATACTATTGTACCATGCCCGACATGTTCATGCGGCTGCCAGGGCACTAAGTCTCAATCGGAGAATTGTGTAGATCCAGATTCACCGCATTTGGCGTCAGTTGTTTCCAACCTCGGAAAGAATAGTGTCACACCTTTGGTTCAATGCACTCGTCATATGTGCCCAATCAAAGTTCACTGGCACATTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTCAATTACAGGATGAATTATTCTGACTGGAACTTGGTTATTCAACACCCGAACTTTGACAACCTCACAAAAGTTTTCAGTTTCAACTACAAGTCAATAACTCCTTATGGGCCCATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTATTGGCAATGTACAATCAGAGCTACTTTTCCGAAAGGATAAATCGACTTTCAGTTTTGAGAAGGGTTGGGCTTTTCCTACAAGGATCTATTTCAATGGTGACAATTGTGTGATGCCACCACCTGATGCATATCCATGGTTACCTAACATCGGTTCCCGACAAGAGGTTTCGCCGCTTGCTGTGATGATGGTCTCCTTGGTAGCCTTGGTATTTTATGCATCTGCTTAA 1341 0.4295 MNNCYAGYNCGRNMVSVTLKTFTNREAYDPLDPNGNITIKWDIKSWDPDGYLAVVTINNFQQYRHISAPGWSLGWTWAKKEVIWSMVGGQATEQGDCSKFKGNTPHCCKKDPTIVDLLPGTPYNQQISNCCKGGVLSSWAQDPINAVAAFQLSVGRAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTQFITGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCQGTKSQSENCVDPDSPHLASVVSNLGKNSVTPLVQCTRHMCPIKVHWHIKLNYKEYWRVKVTVTNFNYRMNYSDWNLVIQHPNFDNLTKVFSFNYKSITPYGPINDTAMLWGIKFYNDFLMQAGPIGNVQSELLFRKDKSTFSFEKGWAFPTRIYFNGDNCVMPPPDAYPWLPNIGSRQEVSPLAVMMVSLVALVFYASA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1326 446 PANTHER PROTEIN COBRA 14 445 IPR006918 GO:0010215|GO:0031225
Lal24g1326 446 Pfam COBRA-like protein 51 214 IPR006918 GO:0010215|GO:0031225
Lal24g1326 446 PIRSF COBRA 6 446 IPR006918 GO:0010215|GO:0031225
Lal24g1326 446 PANTHER COBRA-LIKE PROTEIN 14 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1326 Lal-Chr24 14584071 14587373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1326 17 445 COBRA Gene Family AT3G02210 74.651 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1326 - - gmx:100783820 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1326 24 14584071 14587373 Lal24g1326 24 14584071 14587373 ECH
Lal13g1752 13 17079088 17082641 Lal24g1326 24 14584071 14587373 LSH
Lal24g1326 24 14584071 14587373 Lal22g1278 22 15447454 15452198 PCT
Lal22g1279 22 15450688 15454780 Lal24g1326 24 14584071 14587373 PCT