Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1311 ATGTTTGCTTCTCCGATTGAAGATATGGAAAGTGTGGTAGCAACAGTGAGTGGATACCATGGATCGGAGCGACGAAATCTCATCAAGATGATTTCGTATGCTGGTGCCAATTATGTTGGGAGGATGATGCCATATTCAATCACTCACGTGGTTTGTTGGAAATTTGAAGGGAAAAAATTTGATATTGCCCAAAAGTTCAACATAATTGTAGTCAACCACCGATGGATTGAAGACTGCATAAAGGAAGGAAGGCGTGTACCAGAAGATTCTTATGTCTGGCAAAGTGGTCGTGAAGTAGGGCCACTTCTACTGAAAGTTCCTTCACCCACTGTTCAAGGAAATAAGTTGAGAAAGAAGAAAGTGATTAATGACGGATCATGTGATATTGGCTCTGAAAAGCAGACAACTGAGTTAAGTTCAGGAGCTTCTGGAAATTCTGTTTGGGAAGATTTTCTGATGAACAAGCATGAGGAGTTAAGTTCTCACTCTTCTAGACGATCGCGAAAACAAAAAAGAAATATCTACAATGGTCATGGAGTTAGTAATGTGGCTGCTGGACCTTCTTGTAAAAGAAGGACTGCAAAAAATATTGTCGATGAAGCAGGCTTGGATCCTATCATTTTAGATTTAACCCAGGAGGAGGACCACCTTAGCAGAGTGAATAGACTACAAACTGATGCTGCAGCTACCTCTAGCCCTTCTGGTGGTGTCAATAATAAAAACAATCCAGAAAATAGAGAAGAACCAGATACTGGATTACATAATCAAAGTGGAACTATCAATATAGCTTCAAATGACATTGAACAGATAATAAATTCTAATAATGTATCTACCAATAGTTATTCTACTTTGTTTAAAGAGGATCCTTCACCTATAGGGCAAACATCAGTATGTTCTGGTGCTGAGAATATCCCAGATGGTGATCAGATTGATAAAGTTGGACCTTTGCCTACTTCAAAAGAGTTGTCATGTGTTATATGTTTCGAAGAGTTCAGCTTAACAAGGGGGATCTTGCCGTGTGGACATCGGTATTGTTATCAATGCATCCAGAGTTGGGTTGATCGTAGGACTTCAATGGGAAAAAGTTCAACCTGCCCTTTGTGCAAGGCATGTTTTGTAATGTTCAAGAAAGTTGAGCATGCAGTCACTGCTGATCAAAAAGTATATTCCCAGACAATCCCATCTGGCAATTCAACCTCAGATATTTTTATCAACACAGTTGAAGAATTTCCCCATTATGGTTCTGAGTCAGGTGCTTGTGTAGTTTGTCGTGGTAGGGAACCTGAGGATCTGCTCCAGAGTTGTGATGTTTGCCAACACCAAAGAATCCATTTGTATTGCCTGGACCCTCCTTTACTACCATGGACATGCAGTCACTGCAAGGATCTTAGGAGGCTTTATCATCATCACTCGTATTAG 1419 0.4031 MFASPIEDMESVVATVSGYHGSERRNLIKMISYAGANYVGRMMPYSITHVVCWKFEGKKFDIAQKFNIIVVNHRWIEDCIKEGRRVPEDSYVWQSGREVGPLLLKVPSPTVQGNKLRKKKVINDGSCDIGSEKQTTELSSGASGNSVWEDFLMNKHEELSSHSSRRSRKQKRNIYNGHGVSNVAAGPSCKRRTAKNIVDEAGLDPIILDLTQEEDHLSRVNRLQTDAAATSSPSGGVNNKNNPENREEPDTGLHNQSGTINIASNDIEQIINSNNVSTNSYSTLFKEDPSPIGQTSVCSGAENIPDGDQIDKVGPLPTSKELSCVICFEEFSLTRGILPCGHRYCYQCIQSWVDRRTSMGKSSTCPLCKACFVMFKKVEHAVTADQKVYSQTIPSGNSTSDIFINTVEEFPHYGSESGACVVCRGREPEDLLQSCDVCQHQRIHLYCLDPPLLPWTCSHCKDLRRLYHHHSY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1311 472 Pfam Zinc finger, C3HC4 type (RING finger) 324 368 IPR018957 GO:0046872
Lal24g1311 472 SUPERFAMILY FYVE/PHD zinc finger 407 462 IPR011011 -
Lal24g1311 472 MobiDBLite consensus disorder prediction 158 180 - -
Lal24g1311 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 465 IPR013083 -
Lal24g1311 472 Gene3D BRCT domain 6 98 IPR036420 -
Lal24g1311 472 MobiDBLite consensus disorder prediction 225 255 - -
Lal24g1311 472 SMART ring_2 324 368 IPR001841 -
Lal24g1311 472 SMART ring_2 420 460 IPR001841 -
Lal24g1311 472 SMART BRCT_7 6 83 IPR001357 -
Lal24g1311 472 SUPERFAMILY BRCT domain 8 94 IPR036420 -
Lal24g1311 472 PANTHER F5A8.9 PROTEIN 155 469 - -
Lal24g1311 472 PANTHER F5A8.9 PROTEIN 5 155 - -
Lal24g1311 472 SUPERFAMILY RING/U-box 316 375 - -
Lal24g1311 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 393 IPR013083 -
Lal24g1311 472 ProSiteProfiles Zinc finger RING-type profile. 324 369 IPR001841 -
Lal24g1311 472 MobiDBLite consensus disorder prediction 225 242 - -
Lal24g1311 472 ProSiteProfiles BRCT domain profile. 1 93 IPR001357 -
Lal24g1311 472 ProSitePatterns Zinc finger RING-type signature. 340 349 IPR017907 -
Lal24g1311 472 Pfam twin BRCT domain 12 75 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1311 Lal-Chr24 14434979 14440770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1311 30 91 Core DNA Replication Machinery Family AT4G02110 38.095 1.06e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1311 - - vra:106765083 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1311 24 14434979 14440770 Lal24g1311 24 14434979 14440770 ECH
Lal13g1727 13 16860624 16865540 Lal24g1311 24 14434979 14440770 LSH