Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1302 ATGTACCCTTCTACTTACACTTCCTCAGTCCCTTACACTTGTTACCCTTCTTCTAATTCGTACCCTTTTTTTCCTTTCCTTAACCCTGAAAATGCTTCTTCAAGCAACAACAATAACAACAATACCCTTCTTCATGATCCACTTGTTCATGTTCCTTACAACATACCAACTCATCATTATATTCATAATACACCAATGATCCAAGAAACACTGACCAACTTGGCTGTTTCTGATGCTCATGGTGCTTATAATCACTATGGATTTTCTTCATTGCTCACAAAGAAACCAGCTAAGAAAGATAGGCATAGCAAGATTTACACTTCTCAGGGCTTAAGGGATAGGAGGGTGAGGTTGTCAATCGAGATCTCGCGAAAGTTCTTCGATCTACAAGACATGCTAGGGTTTGACAAAGCAAGCAATACCCTTGAGTGGCTCTTCAACAAGTCCAAGAAAGCAATTAAGGAACTAGCTAGAAGCAAGAACAGCAATATCATTGAAGGTGATGATGCTAAGAGCTACTTCTCATATTCTTCTGATTGTGAGGACTGTAATGAAGTTGTTTCAGGGATCAACAATGAACAACAAGGTATCATCAATGCTGATCATGATTCTCTAAACCTACAACAACAAGGGTTAGATTCAAATGCTGTGAAAGAGATGAGGAAGTTGAAAAGTGTGCAGAAAGAACCAGCTTGTGTTCACACAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGAAAGAGCAAGGGAAAGGACTAGTAACAAGATGAGTAACACTACCAGTAATAATGGGAGGGTAATGGTAGTGCAAGACTTGAAGAAAAAGTGCATTGCAACAACTGAAAATAATACTGAAACCTTGCAACAATTGAGATCACCTATTCAGCTTGAGAACTGTGCAAGATCACCTAGAGATGACAACTTCAATGTAATTGAGGAATCCATTGTGATCAGGAGAAAGTTGAAGCCTTCAATGGTGTCTTCTTCTCATCATCATCATCACCAAAACCTTATGATCCCAAAGGAAGCAAGTTTCAACAACACTGACTACAACTCCTTCACCAATTTATCTCCAAATTGGGATAGTGCTAGTAATGGTGGAAGTGGTATTAATGGCAGGTCCACATTTTGTACAATAGCCAGCATGAATCTCTCTACAGAAATAAGAACAGATTTGACAACAAAAGAATTAGCATGTCTAATTAATGTTGTTAGCATGATCAAAGTAGACACTTCTCTATCTGACAACCTATCTAAACACTGTGCAAACTAA 1272 0.386 MYPSTYTSSVPYTCYPSSNSYPFFPFLNPENASSSNNNNNNTLLHDPLVHVPYNIPTHHYIHNTPMIQETLTNLAVSDAHGAYNHYGFSSLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEISRKFFDLQDMLGFDKASNTLEWLFNKSKKAIKELARSKNSNIIEGDDAKSYFSYSSDCEDCNEVVSGINNEQQGIINADHDSLNLQQQGLDSNAVKEMRKLKSVQKEPACVHTKMKESREKARERARERTSNKMSNTTSNNGRVMVVQDLKKKCIATTENNTETLQQLRSPIQLENCARSPRDDNFNVIEESIVIRRKLKPSMVSSSHHHHHQNLMIPKEASFNNTDYNSFTNLSPNWDSASNGGSGINGRSTFCTIASMNLSTEIRTDLTTKELACLINVVSMIKVDTSLSDNLSKHCAN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1302 423 Pfam TCP family transcription factor 97 258 IPR017887 -
Lal24g1302 423 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 19 388 - -
Lal24g1302 423 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Lal24g1302 423 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 388 IPR005333 GO:0003700
Lal24g1302 423 MobiDBLite consensus disorder prediction 225 253 - -
Lal24g1302 423 ProSiteProfiles TCP domain profile. 98 156 IPR017887 -
Lal24g1302 423 MobiDBLite consensus disorder prediction 225 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1302 Lal-Chr24 14355925 14357941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1302 45 361 TCP Transcription Factor Family AT1G67260 33.233 6.23e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal24g1302 TCP 5.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1302 - - lang:109354107 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1302 24 14355925 14357941 Lal19g1416 19 16864961 16866872 ECH
Lal24g1302 24 14355925 14357941 Lal7g1307 7 18425551 18427032 ECH
Lal24g1302 24 14355925 14357941 Lal14g1863 14 18152958 18154429 ECH
Lal24g1302 24 14355925 14357941 Lal24g1302 24 14355925 14357941 ECH
Lal24g1302 24 14355925 14357941 Lal6g1641 6 19134796 19136403 ECH