Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1281 ATGAATATTTCAGAGAAAGATTCTACATTGTTATTGAATCAAAACATTAAGGACAATGTTTTTCTTCAATCTAATGCCTCCAATGTTACATCTACCCCAAAGCAACCATTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGGAAAACATCAGTGTGCAACAAGATAAATACCAATTTTCGTGATCAACATGTTGTTCTTATTAATCAAGATTCATTTTACTACTCTTTGAAGGACAACATGGTACAGAAAGTTAATGAATATAACTTTGATCATCCTGATGCCTTTGATACAGAGCTTATGCTTTCATCTATGGAGAAATTAAAACTCGGACAAGCTGTTACGATACCGAATTACGATTTTAATCGGCATAAGAGAACTGAACCTGGATGTCAGGTTAACCCTGCAGATATAATAGTTTTCGAAGGGATACTAGTTCTTCACGATTCTCGTGTCCGCGATCTTTTGAACATGAAGATATTTGTTGATGAAGATTCCGATGTGCGCCTTACACGGAGGATTCAACGTCTAGCTATTGAACGCGGAAGGAACATTCAGAATGTTCTAGATCAATATTCCAGATTTGTAAAGCTCAGTTTTGAAGAATTTGTGTTGCCAACAAAAAAATATGCTGATATTATAATTCCGGGTGGAGGAGATAATGAAGTTGCCATTGATTTGATTGTGCAAAATATACGTATGAAGCTCGGCCAGCATGATCTGTGTAAAATATATCCAAATATTTTTGTTATGCTTTCAACATTTCAGATTAAGGGAATGCATACCCTCATCCGCGATGTCAGAACAACAAAGCATGACTTCGTGTTTTACTCCGACCGCCTTATTAGGCTGGTTGTTGAGCATGGCCTTGGTCACCTTCCTTTTACTGAAAAACAAGTCAAAACTCCAACAGGATCTGTATACCCTGGTGTAATTTTTTGTAGCAGGCTTTGTGGAGTATCAGTGATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGCTGTAAAGGAATCAAAATAGGTAAAATCCTTATTCATGGACAAGGCACAAATGGAAGACAGTTAATCTATGAAAAGCTACCAAAAGACATTGCAAGCCGCCATGTGTTGCTACTTGATCCAGTTCTGGCCACAGGAAATTCTGCAGTCAAGGCTATCTCTCTACTTGTCAAGAAAGGTGTACCAGAATCCAATATTATCTTTCTAAATCTAATAGCAGCACCACAGGGAATACATGCAGTATGCAAAAGATTTCCAATGCTGAAGCTAGTGACATCAGAGATTGATGCATCATTAAATGAGAATTCTCGTGTGATCCCTGGCTTGGGAGAGTTTGGTGATCGTTACTTTGCTACTGATGATGATTAA 1374 0.3792 MNISEKDSTLLLNQNIKDNVFLQSNASNVTSTPKQPFFIGVAGGTASGKTSVCNKINTNFRDQHVVLINQDSFYYSLKDNMVQKVNEYNFDHPDAFDTELMLSSMEKLKLGQAVTIPNYDFNRHKRTEPGCQVNPADIIVFEGILVLHDSRVRDLLNMKIFVDEDSDVRLTRRIQRLAIERGRNIQNVLDQYSRFVKLSFEEFVLPTKKYADIIIPGGGDNEVAIDLIVQNIRMKLGQHDLCKIYPNIFVMLSTFQIKGMHTLIRDVRTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVKTPTGSVYPGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGQGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLVKKGVPESNIIFLNLIAAPQGIHAVCKRFPMLKLVTSEIDASLNENSRVIPGLGEFGDRYFATDDD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1281 457 Pfam Uracil phosphoribosyltransferase 252 454 - -
Lal24g1281 457 PRINTS Uridine kinase signature 36 53 - -
Lal24g1281 457 PRINTS Uridine kinase signature 66 77 - -
Lal24g1281 457 PRINTS Uridine kinase signature 111 126 - -
Lal24g1281 457 PRINTS Uridine kinase signature 167 177 - -
Lal24g1281 457 PRINTS Uridine kinase signature 181 192 - -
Lal24g1281 457 PRINTS Uridine kinase signature 203 216 - -
Lal24g1281 457 PANTHER URIDINE KINASE-LIKE PROTEIN 5 17 452 - -
Lal24g1281 457 PANTHER URIDINE KINASE 17 452 - -
Lal24g1281 457 Gene3D - 32 238 IPR027417 -
Lal24g1281 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 228 IPR027417 -
Lal24g1281 457 SUPERFAMILY PRTase-like 238 454 IPR029057 -
Lal24g1281 457 Pfam Phosphoribulokinase / Uridine kinase family 38 223 IPR006083 GO:0005524|GO:0016301
Lal24g1281 457 TIGRFAM udk: uridine kinase 36 235 IPR000764 -
Lal24g1281 457 CDD UMPK 38 233 IPR000764 -
Lal24g1281 457 Gene3D - 239 454 IPR029057 -
Lal24g1281 457 CDD PRTases_typeI 317 427 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1281 Lal-Chr24 14098660 14103404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1281 22 457 PRT Gene Family AT4G26510 72.018 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1281 K00876 - gmx:100803453 692.189