Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1271 ATGGGAAGACAACCATGTTGTGATAAGGTTGGTGTTAAGAGAGGTCCATGGACAATTGAAGAAGATCATAAGCTTATGAGTTTCATTATCAACAATGGTTCCAAACCTTGCAGATGTGGAAAAAGTTGTAGATTGAGATGTATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGTTTTACAGAAATGGAAGAGAATCAAATTATACAACTACATTCACTTCTTGGTAAGAGATGGTTTAAGATTGCAACACATTTTCCTGGAAGGACAGATAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGATTAAAACTCCTGGGCCTGGACCCTCTAACCAAGAAGCAAAATACATCAAAAGGGTATGAAGAAAATGTAGAGATAAAGTCATTGCACAATAATGGCACCAAAGAGATGAAAAAAACAAAAGAGAAAATTGAAGAAAAGGAAAATAAGGTGACTTGGGATGCTGAATTTCACAACTATGAAATCCAAAGTTCCAAGGTTGACTTTGGATCATGCATAAGCCAAGAAAACAACACAAGTGTTAGTTCTTATTGTAGTTCTTCTTTCTCTATTGATGATTCTAGCTACCCTTATGTGGGTCAATTCCCTTATCTTGAAGGAAACTCCCTACAACAATGGGTTGATAGTATGGATTCTATTCTCTCATGGGATAGCCTTAATCCACTTGAAGAAGATTTTCACTTGTTGGAAAATAAGGAATAA 735 0.3578 MGRQPCCDKVGVKRGPWTIEEDHKLMSFIINNGSKPCRCGKSCRLRCINYLRPDLKRGGFTEMEENQIIQLHSLLGKRWFKIATHFPGRTDNEIKNHWNTRIKKRLKLLGLDPLTKKQNTSKGYEENVEIKSLHNNGTKEMKKTKEKIEEKENKVTWDAEFHNYEIQSSKVDFGSCISQENNTSVSSYCSSSFSIDDSSYPYVGQFPYLEGNSLQQWVDSMDSILSWDSLNPLEEDFHLLENKE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1271 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Lal24g1271 244 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lal24g1271 244 CDD SANT 60 100 IPR001005 -
Lal24g1271 244 SUPERFAMILY Homeodomain-like 11 98 IPR009057 -
Lal24g1271 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 190 - -
Lal24g1271 244 Coils Coil 134 154 - -
Lal24g1271 244 PANTHER MYB DOMAIN PROTEIN 40 2 190 - -
Lal24g1271 244 Gene3D - 12 57 - -
Lal24g1271 244 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Lal24g1271 244 Gene3D - 59 106 - -
Lal24g1271 244 SMART sant 56 104 IPR001005 -
Lal24g1271 244 SMART sant 13 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1271 Lal-Chr24 14044700 14046343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1271 1 147 MYB Transcription Factor Family AT1G66230 57.962 1.23e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal24g1271 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1271 K09422 - gmx:100819471 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1271 24 14044700 14046343 Lal24g1271 24 14044700 14046343 ECH
Lal12g1356 12 16671708 16673700 Lal24g1271 24 14044700 14046343 LSH