Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1265 ATGGCTGGAACTGCTATTAAGCAGTTAGTAAGGAGGAATCTCCAATCTCATTCTCCCAATTTTTCTTTTATTTCATCCATTGTTACAAAGAAAGATGGTGCTGACTCTACTGACAGAAGCTCCTTCAGAGCACTTGCCTTAATTGGAGCTGGTGTCTCAGGTTTTTTTGGTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAGATTATCCATGGCCTCACAATGGCATCCTCAGCTCGTATGATCATGCCTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTTTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTACCGTGATTTGGTTGGTGTTGCTTATACAGAAGATGAGGTAAAGGCTATGGCAGCTGAGATTGAAGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCCGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGACAGAACTATGTATTTGCCCTTCTAACTGGTTATCGTGACCCTCCAGCTGGTGTTTCGATTAGAGAGGGACTTCACTATAATCCTTATTTTCCTGGCGGAGCCATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAATACGAAGATGGTACCCCGGCTACAGAAGCTCAGATGGGAAAGGATGTTGTATCATTCTTAACTTGGGCTGCGGAACCTGAGATGGAAGAGAGAAAACTGATGGGGTTTAAATGGATATTTGTGTTATCATTGGCATTGCTTCAAGCTGCCTATTATCGTCGCCTTAGGTGGTCTGTTCTAAAATCTCGCAAGCTGATTCTTGATGTTGTCAACTAG 924 0.4405 MAGTAIKQLVRRNLQSHSPNFSFISSIVTKKDGADSTDRSSFRALALIGAGVSGFFGFATTASADEAEHGLACPDYPWPHNGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEDEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLILDVVN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1265 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Lal24g1265 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Lal24g1265 307 Gene3D - 263 306 - -
Lal24g1265 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
Lal24g1265 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 23 307 - -
Lal24g1265 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 PANTHER CYTOCHROME C1 23 307 IPR002326 GO:0009055|GO:0020037
Lal24g1265 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1265 Lal-Chr24 13982165 13989193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1265 1 307 Chloroplast and Mitochondria Gene Families AT3G27240 82.736 1.70e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1265 K00413 - gmx:100803087 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1265 24 13982165 13989193 Lal24g1265 24 13982165 13989193 ECH
Lal12g1351 12 16626513 16632833 Lal24g1265 24 13982165 13989193 LSH
Lal13g1667 13 16425907 16432016 Lal24g1265 24 13982165 13989193 LSH