Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1261 ATGGGGCTGAAGAACACAATTTTGTTGGTAATGGTTGCTACCTTAATGGTAAATGAGGGCTTGGCTTTTCAACATGTTGTGGGTGGAAGCCAAGGTTGGGATCAGTCCACAAATTTTAACTCATGGATTTCAGCTCAAACATTTAAAGTTGGAGATCAACTTGTTTTCAAGTACTCTTCTATGCATAGTGTGGTTGAACTGAGTGGAGAGAGTGATTATAAGACTTGTAACATTGGCAGTTCAGTGAACACTATGAGCAGTGGCAATGATGTAATAAAGTTGGACAAACCAGGAACAAGGTACTTCACTTGTGGTACCTTAGGCCATTGTAGTCAAGGCATGAAGGTGAAGATTAAAGTAGTAAAAGGGAAACTATCTTCTTCTTCTCCCGCATTATCACCGTCATCGTCATCTTTTACTCCTATATTATCACCATCGTCGTCGTCATCGTCGTCATCATCATCTTCTTCTTCTCCTACCTCTACTTCTACTTCTGAAGCTTCACAAATAGAAGATCTTGCCATGACAATGGAGGCAGCATCTGGTCCCCACTTCTCAGGTCTACACCTAGACGGCGTCGTTTCTCCTTCTCAGTCTTCTCCACTTTCACAACATCATCTTCAACCTCGTTTCCCTTCTTCTCCTTTCGATTCCTCTTCCTTAATTCCCAATCAACCCTTCGTTATAGGTGTTTCTGGAGGCACTGCTTCTGGTAAAACTACTGTCTGTGATATGATTATTCAACAGCTTCACGATCACCGCGTTGTTCTTGTCAATCAGGATTCGTTTTATCGTGGTTTGACACCTGAGGAGCTGGAGCGTGTGCACGAGTATAATTTTGATCATCCTGATGCTTTTGATACCGAGCAACTATTAGAGTGCATGAGAAAGCTCATAGGTGGCCAGAGTGTTCAACTCCCAATCTACGACTTCAAGAACCACCAACGCTCGACAGATAGCTTCCGGCAGGTCAATGCTTCTGATGTCATTATATTGGAGGGAATTCTTGTTTTCCATGATCAAGGTGTCCGGGATCTGATGAATATGAAAATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAGTTTGTTAAGCCTGCCTTTGATGATTTTATTCTTCCATCAAAGAAGTATGCTGATGTGATCATTCCCAGAGGAGGTGATAATCATGTTGCCATTGATCTGATCGTGCAACATATTCACACAAAACTTGGTCAACATGATCTATGCAAGATATATCCAAACGTGTATGTTATTCAGTCAACATTTCAGATAAGGGGCATGCACACTTTGATTCGTGACCAAGACCTATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGTCTGGTTGTTGAGCATGGCCTTGGTCATCTGCCATTCATTGAGAAGCAAGTAGTTACTCCGACAGGATCTGTCTACACTGGTGTTGACTTCTGCAAGAAATTGTGTGGCGTTTCAATTATTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGAGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCATCGGGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTTCCCAAGGATATTTCTGAACGCCATGTCTTGCTTCTTGACCCTGTCCTGGCTACAGGTAACTCTGCCAACCAAGCAATTGAGTTACTCATTCAGAAAGGAGTTCCAGAATCCCACATTATATTCCTGAATCTCATATCTGCTCCCGAGGGAATCCATTGCGTGTGTAAAAAGTTTCCGTCGCTGAAAATTGTCACATCTGAGATTGATCATGCATTAAACGAAGAGTTTCGTGTTATCCCAGGATTGGGTGAGTTTGGTGATCGATACTTTGGTACCGATGATTGA 1944 0.4192 MGLKNTILLVMVATLMVNEGLAFQHVVGGSQGWDQSTNFNSWISAQTFKVGDQLVFKYSSMHSVVELSGESDYKTCNIGSSVNTMSSGNDVIKLDKPGTRYFTCGTLGHCSQGMKVKIKVVKGKLSSSSPALSPSSSSFTPILSPSSSSSSSSSSSSSPTSTSTSEASQIEDLAMTMEAASGPHFSGLHLDGVVSPSQSSPLSQHHLQPRFPSSPFDSSSLIPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTPEELERVHEYNFDHPDAFDTEQLLECMRKLIGGQSVQLPIYDFKNHQRSTDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDQDLSKHDFVFYSDRLIRLVVEHGLGHLPFIEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKKFPSLKIVTSEIDHALNEEFRVIPGLGEFGDRYFGTDD 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1261 647 ProSiteProfiles UvrC family, homology region profile. 332 415 IPR001162 GO:0009381
Lal24g1261 647 TIGRFAM udk: uridine kinase 226 426 IPR000764 -
Lal24g1261 647 CDD UMPK 228 426 IPR000764 -
Lal24g1261 647 Pfam Uracil phosphoribosyltransferase 444 645 - -
Lal24g1261 647 Gene3D - 223 429 IPR027417 -
Lal24g1261 647 CDD Phytocyanin 24 114 - -
Lal24g1261 647 SUPERFAMILY PRTase-like 429 646 IPR029057 -
Lal24g1261 647 MobiDBLite consensus disorder prediction 187 216 - -
Lal24g1261 647 Gene3D - 21 126 IPR008972 -
Lal24g1261 647 SUPERFAMILY Cupredoxins 22 121 IPR008972 -
Lal24g1261 647 Gene3D - 430 645 IPR029057 -
Lal24g1261 647 Pfam Phosphoribulokinase / Uridine kinase family 228 414 IPR006083 GO:0005524|GO:0016301
Lal24g1261 647 MobiDBLite consensus disorder prediction 192 216 - -
Lal24g1261 647 MobiDBLite consensus disorder prediction 127 168 - -
Lal24g1261 647 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Lal24g1261 647 PRINTS Uridine kinase signature 226 243 - -
Lal24g1261 647 PRINTS Uridine kinase signature 256 267 - -
Lal24g1261 647 PRINTS Uridine kinase signature 301 316 - -
Lal24g1261 647 PRINTS Uridine kinase signature 358 368 - -
Lal24g1261 647 PRINTS Uridine kinase signature 372 383 - -
Lal24g1261 647 PRINTS Uridine kinase signature 394 407 - -
Lal24g1261 647 CDD PRTases_typeI 503 618 IPR000836 -
Lal24g1261 647 PANTHER URIDINE KINASE 185 644 - -
Lal24g1261 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 419 IPR027417 -
Lal24g1261 647 ProSiteProfiles Phytocyanin domain profile. 23 122 IPR003245 GO:0009055
Lal24g1261 647 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 185 644 IPR029930 GO:0004849|GO:0044206
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1261 Lal-Chr24 13941821 13952908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1261 173 647 PRT Gene Family AT5G40870 85.714 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1261 K00876 - pop:7467715 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1261 24 13941821 13952908 Lal24g1261 24 13941821 13952908 ECH