Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1239 ATGGGTTCATATTACTTTAACAATGGTGCTGTAATTCGTTCTTCTTGTGCTTTGGTTCCTCAACAACCTCTTCTTACCAACCCTTTTGAGATAATGGGTTCACTACAAGAGGTTGAAGTTGGTAATGAAGTTCATGGTTGGAACTCAACTTCTGCAGTGAAATCTAAATTTTGTGCTAGAGGACATTGGAGGCCATGTGAAGATGCTAAACTCAAAGAACTTGTTGATGAATTTGGTCCTCAAAACTGGAACTATATTGCAGAACATTTTGAAGGAAGATCAGGCAAAAGTTGTAGACTGAGATGGTTTAATCAACTAGATCCAAGAATTAACAGAAGTGCTTTCACTGAAGATGAAGAAACAAGGCTCATAACTGCTCATAATTTATATGGTAATAAATGGGCTTTGATTTCTAGGCTCTTCCCTGGAAGAACAGATAATGCAGTCAAGAACCAATGGCATGTAATGAAAGCTAGAAGAGTGAGGGATGAGTTAAATCACTATAGAAAAAGAAACTACCCTAACTTCCAAAGGGGTTTGAATCTGAATCTTTCAAACAATGCAGCTAGTGTTTCAACCAACTCAAGCATCATAAATGAATCTGCCTCAACCTGCAATAACATATCCCTCACTGCATCTTCAGCCACACCAATTTTCATGCCTTTTTCTAACCTTGATCCAGTTCATAATCATCAAGCCTATGGATCCCTAATGGGTTTATCTGGAGAAAGGGTGGTGCAAAATGAGCATGTAGGTTTTGGCAACTTTTTTGGTGCTTGGAATGGTTCTTCATTTCAGATGGGAAAGGTGAATGATGTAATAATGGACCAACCCAATTATTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTACCACAAAGAGGACCACAAATCTCTCAAAATCTGGTGAAAGTGAAAACATGTATTATGATAATATTCAAAGGCCATTCATTGACTTTCTTGGAGTAGGAGATGCATAG 987 0.3789 MGSYYFNNGAVIRSSCALVPQQPLLTNPFEIMGSLQEVEVGNEVHGWNSTSAVKSKFCARGHWRPCEDAKLKELVDEFGPQNWNYIAEHFEGRSGKSCRLRWFNQLDPRINRSAFTEDEETRLITAHNLYGNKWALISRLFPGRTDNAVKNQWHVMKARRVRDELNHYRKRNYPNFQRGLNLNLSNNAASVSTNSSIINESASTCNNISLTASSATPIFMPFSNLDPVHNHQAYGSLMGLSGERVVQNEHVGFGNFFGAWNGSSFQMGKVNDVIMDQPNYSDSNSEVSVSESVTTKRTTNLSKSGESENMYYDNIQRPFIDFLGVGDA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1239 328 PANTHER OS08G0435700 PROTEIN 48 327 - -
Lal24g1239 328 SUPERFAMILY Homeodomain-like 60 153 IPR009057 -
Lal24g1239 328 PANTHER MYB PROTEIN-RELATED 48 327 - -
Lal24g1239 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 106 IPR017930 -
Lal24g1239 328 ProSiteProfiles Myb-like domain profile. 60 106 IPR001005 -
Lal24g1239 328 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Lal24g1239 328 Pfam Myb-like DNA-binding domain 112 156 IPR001005 -
Lal24g1239 328 Gene3D - 113 178 - -
Lal24g1239 328 CDD SANT 63 104 IPR001005 -
Lal24g1239 328 SMART sant 111 159 IPR001005 -
Lal24g1239 328 SMART sant 59 108 IPR001005 -
Lal24g1239 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 161 IPR017930 -
Lal24g1239 328 Gene3D - 60 111 - -
Lal24g1239 328 CDD SANT 114 157 IPR001005 -
Lal24g1239 328 ProSiteProfiles Myb-like domain profile. 107 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1239 Lal-Chr24 13675143 13677975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1239 51 326 MYB Transcription Factor Family AT5G17800 43.310 2.16e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g1239 Myb_DNA-binding 7.2e-13 CL0123