Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1219 ATGAATGACCTTATGACCAAATCTTTCACAAACTATGTTGATCTAAAGAAAGCAGCACTGAAAGATGAAGTTGATTTAGAAGCTGGAATTCCTCACCACAACTTAGAATTAACCACTTCCAACCCAAAACTTGATATTGATATGGGTCTCTTCCTTGAAGAAGCAGAGAAAGTGAAATCAGAAATGAATACAATTCGGGTCATACTCGAAAACCTTCAACAAGCAAATGAGGAAAGTAAGTCACTTCATAAGCCCGAAGGGCTTAAATCCTTAAGGAACAACATCAATGCTGATATAGTCACAGTGCTAAAGAAAGCAAGATCCATCAAGGCTCAGCTTGAAGGAATGGACAAAGCGAATGCCGCGAATCGAAGGCTTTCAGGGCTGAAAGATGGGTCTCCAGCGATATACAGAACAAGAATCGCGGTCACGAGCGGGTTGAGGAAGAAGCTGAAGGAGTTAATGATGGAGTTTCAAGGGCTGAGACAGAAGATGATGAATGAATACAATGATACAATAGGGAGAAGGTATTATACTGTGACTGGTGAGTACCCTGATGAGGATGTGATTGAGAAGATTATATTGAATGGGGCCGAAGAGTTTGTAGGGAAAGCAATTCAAGAACATGGGAGAGGGAAGGTTTTGGAAACTGTGGTGGAAATACAGGACAGGTATGATGCTGCTAAAGATATTGAGAAGAGTTTGTTGGAGTTGCATCAGGTTTTCTTGGATATGGCTGTAATGGTTGAGGCACAGGGTGAGAAGATGGATGATATTGAACACCATGTTCTTCATGCTTCTCATTATGTTAAGGATGGAACTAAGAATCTTCATACTGCAAAGAAGTATCAGAGTGGGAGTAGGAAGTGCATGTGCATTGGGCTCATACTTTTGCTCATTATCATTCTTCTCATTGTTATCCCAATTGCTACCAGTTTCCGCACTTCTTGA 951 0.4101 MNDLMTKSFTNYVDLKKAALKDEVDLEAGIPHHNLELTTSNPKLDIDMGLFLEEAEKVKSEMNTIRVILENLQQANEESKSLHKPEGLKSLRNNINADIVTVLKKARSIKAQLEGMDKANAANRRLSGLKDGSPAIYRTRIAVTSGLRKKLKELMMEFQGLRQKMMNEYNDTIGRRYYTVTGEYPDEDVIEKIILNGAEEFVGKAIQEHGRGKVLETVVEIQDRYDAAKDIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTAKKYQSGSRKCMCIGLILLLIIILLIVIPIATSFRTS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1219 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Lal24g1219 316 SMART tSNARE_6 213 280 IPR000727 -
Lal24g1219 316 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 309 - -
Lal24g1219 316 Pfam SNARE domain 255 306 IPR000727 -
Lal24g1219 316 Gene3D - 214 313 - -
Lal24g1219 316 PANTHER SYNTAXIN 5 309 IPR045242 -
Lal24g1219 316 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal24g1219 316 Pfam Syntaxin 51 253 IPR006011 GO:0016020
Lal24g1219 316 SUPERFAMILY t-snare proteins 46 273 IPR010989 GO:0016020|GO:0016192
Lal24g1219 316 CDD SNARE_syntaxin1-like 217 277 - -
Lal24g1219 316 CDD SynN 48 205 IPR006011 GO:0016020
Lal24g1219 316 Gene3D - 48 176 - -
Lal24g1219 316 SMART SynN_4 43 170 IPR006011 GO:0016020
Lal24g1219 316 Coils Coil 55 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1219 Lal-Chr24 13417181 13418131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1219 1 316 SNARE and Associated Proteins AT1G08560 64.890 3.96e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1219 K08486 - gmx:100816016 476.863