Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1206 ATGTCTGCAATGTTTTGTGGAAACAATGTTCTTCAGAATGATATTGATTTGCTAAATCCCCCAGTTGAGTTGGAGAAGAGAAAGCACAAGCTCAAGCGCCTTGTTCAGACCCCTAATTCTTTCTTCATGGACGTTAAATGCCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACGGTTGTGGTATGCGGCAATTGCCAAACTGTCTTATGCCAACCAACCGGTGGAAAGGCAAGGCTAACTGAGGGTTGCTCATTTAGGAAGAAGGGAGACTAA 285 0.4456 MSAMFCGNNVLQNDIDLLNPPVELEKRKHKLKRLVQTPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1206 94 Pfam Ribosomal protein S27 38 92 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal24g1206 94 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 8 93 - -
Lal24g1206 94 Gene3D - 13 93 IPR023407 -
Lal24g1206 94 PANTHER 40S RIBOSOMAL PROTEIN S27 8 93 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal24g1206 94 SUPERFAMILY Zn-binding ribosomal proteins 38 92 IPR011332 GO:0006412
Lal24g1206 94 ProSitePatterns Ribosomal protein S27e signature. 46 78 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal24g1206 94 Hamap 30S ribosomal protein S27e [rps27e]. 32 92 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1206 Lal-Chr24 13302517 13303909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1206 10 94 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.118 6.24e-58 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1206 K02978 - sspl:121746693 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1206 24 13302517 13303909 Lal24g1206 24 13302517 13303909 ECH
Lal13g1569 13 15510810 15513320 Lal24g1206 24 13302517 13303909 LSH