Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1205 ATGGAGAGTGAGATTCTAAGAACTCCTTGGTTTGAAGAACCCCAAGACATTCCACCATGGACCAACAACAACAATAACAACAACAACATCAACAACAACCTCATAAACGACGACGTTTCATCCTTCAAATCATTTCTTCAAGTTGATGATTGGTTCATGAATTCTACCTTAAACAATGACATTGCTTTCACTTCAAATCAAAATCAAAACTTTATGATTCAACCTTTGAACCCATCTTCTTCAAATGCATCATCACCTTCTACTATTTCTCACACTCCATTTTTCAACTTAACCACCAACAACAACCCTTTTACCAATGATTTTGATTTTGCCTCTGAACCCGTTTTTCTCAATCCAAATTCCAATCTTTTGATGGGTTTCAACTCCAATGTTAACACTCTTCACCTGAGTTCAAACAACAACACAATGGGTATGGTTGAAGAGAATTTTCATGGCTCTGAACCTTCCATTTCGCTGTTTTCCAACAATGTAAGTGTTTTGCAGCAAAACACTATCGAGGTTCCTGCTCCGGCGGCTGCGCCACCACTTCCGGTGACTCTTTTTCAGAAGCGCCGCCATGGCTCTGATGATAAGTTGGGAGCATTGGAGATTCGGGCCGCGAAGAGGCTCGCTGCAATGGAAGCTGAAGAAGGGTTGAATGATGATGATGATGATGGTGGTGATGATGATGATGATGTTGTTGAGATTGATAAGTATGAAGAGAATTTGAATGGTGGAGGGAGCAATTTCAATGGAAATAATGTTAGTGGTGATAATGTTGGTGTCATTGTGAATGGTGGAACTCTGAAGGGGAAGAAGAAAGTGGCGCCGGCGAAGAATCTTCTGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGCTTTACATGCTTAGGTCCGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGAGTACTTGAAGGATTTAAAACACAAGGTTAATGATCTTCATAATGAGCTGCAATCATTTCCATCTTGCTCATCTGGGACTGTGACACCTTCTTCAAGCTTTCACTCTGTGACACCCACTCTGCCAACTCTTCCTTCCAAGGTGAAGGGTGAACTATGTCTTAGCTCCTTCTCAAGTCCTAAAGGTCACTCACCAAAGGTGGAGATTAGGCTAAGTGAAGACAGAGCTATCAATATCCATATGTTTTGTGCCCGAAAACCCGGCCTTTTCCTTTCGACCATGAAGGCGTTAGATAGCCTCGGATTGGATGTTCAGCAAGCAGTTATCAGCTGTTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGCTGTTTGTTCCTATGGTGATGCAAGTGCCTATATTTGTTCATGTGACGCAATGCAGAGACCAGGAACTTCTTCCTGAGCAGATTAAAGCAGTGTTGTTGCAAGCAACTGCTTTTCATGGAATGATGTAA 1452 0.4256 MESEILRTPWFEEPQDIPPWTNNNNNNNNINNNLINDDVSSFKSFLQVDDWFMNSTLNNDIAFTSNQNQNFMIQPLNPSSSNASSPSTISHTPFFNLTTNNNPFTNDFDFASEPVFLNPNSNLLMGFNSNVNTLHLSSNNNTMGMVEENFHGSEPSISLFSNNVSVLQQNTIEVPAPAAAPPLPVTLFQKRRHGSDDKLGALEIRAAKRLAAMEAEEGLNDDDDDGGDDDDDVVEIDKYEENLNGGGSNFNGNNVSGDNVGVIVNGGTLKGKKKVAPAKNLLAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKDLKHKVNDLHNELQSFPSCSSGTVTPSSSFHSVTPTLPTLPSKVKGELCLSSFSSPKGHSPKVEIRLSEDRAINIHMFCARKPGLFLSTMKALDSLGLDVQQAVISCFNGFALDVFRAELFVPMVMQVPIFVHVTQCRDQELLPEQIKAVLLQATAFHGMM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1205 483 Pfam Helix-loop-helix DNA-binding domain 282 324 IPR011598 GO:0046983
Lal24g1205 483 PANTHER BHLH TRANSCRIPTIONAL FACTOR 88 483 - -
Lal24g1205 483 SMART finulus 281 330 IPR011598 GO:0046983
Lal24g1205 483 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 483 - -
Lal24g1205 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 352 IPR036638 GO:0046983
Lal24g1205 483 Gene3D - 270 339 IPR036638 GO:0046983
Lal24g1205 483 CDD bHLH_AtAMS_like 278 344 - -
Lal24g1205 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1205 Lal-Chr24 13288408 13293665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1205 37 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 44.421 2.57e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g1205 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1205 - - lang:109353510 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1205 24 13288408 13293665 Lal24g1205 24 13288408 13293665 ECH
Lal12g1299 12 15935532 15940604 Lal24g1205 24 13288408 13293665 LSH