Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1167 ATGGATCATAGAACTAAACCGAATCACTCACTTTCACATTCTACTCTCTTCAATCTTGAGTCTTTGATGAATTTTCAAATTCCGCAACGGGATGGTGATTTTGATTGTTGTGGAAATAGTAGCCAGGATGATGAAAGCAGAGATAACCAAGGTGGTGGGGCTATTGCAAATCACAGTAATGGGAGTGTGCATGGGATGGATGTAAGCTTGTCGAAGAAGAGGGTGTGGTCTCAAAACAGCGACGATGAGGAAAAGAACGATTTTGACGGGACATATGTGACAGAGGAGCGATATCGATCAATGCTAGGAGAGCATGTCCAGAAATACAAGAGGCGGTTTATGGATACCTCCTCTAGTCCTGCTCAAAATCGGATTGCTGTTCCGGTTGTTAAAAGTAGCACAAGCTTTCAGGGTCAAAAAATGGGGAATGATCACAGGGGAGGTTTGCATGCTGCAAAGACTACTTCTAAATGGCTATATGATTCCAATTCTCAGAAACAAGGAAACCACCGCGGTGCAGATTTCATGCCGCGATGTGGCACTGATAGGATTATGTATGAACCTGCTTCTTTGGACATTGGGGATGGGATCACTTACAGGATTCCTCCAATTTATGATAAGTTGGCTACAACACTGAACCTTCCAAGTTTCTCTGATATCCATGTGGAGGAATTTTATTTAAATGGTACCTTGGATTTGGGGTCTTTGGCTGCAATAATGGCTGCTGATAAAAGGTCTGGGACTAGAAACCAAGCAGGCATGGGGGAACCCATACCCCAATATGAATCACTTCATGCACGATTGAAGGCCATGTCAGCTGCTAATTCACCTCATAAGTTCAGTCTGAAAGTATCTGATGTCGGTTTGGGTTCCTCCATCCCGGAGGGGGCAGCTGGAAGCATAAGACGATCTATTATGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGACACCTATGAGATCATTGAGCGAAGCTTACCTAAGAAGCATAAGGTAACGGAAGACCCTGCTTTAATTGAGAAGGAAGAAATCGAAAGAATTGGAAAGGTTAGGATGAAAGTTAGTAGATCACATAAATGGATTAAGGGGGCTAGCATTCGCACCCGCAAAATCGCCAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGACTTAATTTCCTCATACAACAAACTGAGCTATACGGCCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAGCACCCATGGCAGTTGAAAAAACAAATGATCAAGATACTCCTGTTGACTCTTCAGATACTGGGCCTAATGAAGATCCTGAAGAGGCTGAATTGAAGAAGCAAGCATTGAAAGCTGCTCAAGAAGCAGCCTCTAAGCAGAGAACGTTGACTAGTACCTTTGACAGTGAAAGCTTGAGGTTGCGCCAGGCTGGTGAATCTGATTCACTTCTGCCGGAAGTTGCAGGAGCAACTAACATTGATTTACAAACTCCCTCAACCATGCCAGCCACATCCACAGTTCAGACACCAGAATTATTTAAAGGCCGTCTAAAAGATTATCAGCTAAAAGGTCTACAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAACGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATCCAGGCTATGGCCTTTTTAGCCCATTTAGCAGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGATATTAAAAGGCTTCCTTATTGGGGAGGGCTTTCAGAGCGGACAATACTTAGGAAAAGTATCAATCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCATGTTCTCATCACAAGTTATCAGCTATTAGTATCCGATGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTACTTGTCGGAATCGCCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCTGAGTTGTGGGCGCTGCTTCACTTCATTATGCCGACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAAAACCATGCAGAGCATGGGGGTACTTTGAATGAGCACCAACTAAATAGATTGCATTCAATTCTAAAGCCTTTCATGTTGCGACGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTATGAAAACTGAGGTTATGGTGCATTGCAAGTTAAGCTCTCGACAGCAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGCTGTTTGACAGTAATCGAGGACAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTGAGAAAGGTTTGCAACCATCCGGATTTGTTTGAAAGGAGTGAAGGAAGCACATTCTTTTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGTACATATACTATCCCGGAGGTCACAACCCCGTATCATATGAGGTACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCCGAAACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTACAGGGAATCTTTTCAGAAACACTTTAATATTTTTAGACCAGAAAATATTTATAGATCTATCTTCTCAGAAGATAGGGTTGTTAAATGTGGAAATTTCGGTTTCACCCATTTGATTGATTTGTCTCCACATGAGGTGGCATTTCTGGCCACATGTTCTTTCATGGAGCAACTATTATTTTCTATGATGAGATGTGAACAGAACTTCCTTGATGAAGCTGTAGACTTTCTTATGAACACTATAATAGATGATTCTGAATGTAGTTACCTGGAGAAAGGAAAAGTGAAAACTGTTACACGAATGTTATTGCTGCCATCGAGATCTGGGAACAAGTTTCTTCAAAGAAGGTTTGCAACTGGGCCCACCCAAGCTCCTTTTGAGGCCTTAATTGTCCCGCATCTGGATAGGCTCGTATCTAATGCAAGACTTCTTCACAACGCATATACATATATCCCGCCTACTAGAGCTCCCCCAATTGGTATTCACTGCTCAGATAGAAACTTCTCCTATAAAATGATTGAAGAGTTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCTCGTACATCTAAATCTAATGGGCCTAGAATGCCTGATCATCCTCCCCACCATTTAATTCAAGAGATCGATTCCGAATTACCTGTCTCACAGCCTGCTCTTAAGCAGACACACAACATTTTTGGCTCTTCACCACCTATGCGGAGTTTTGATCCAGCAAAGTTGCTCACCGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCACCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCATCTACTATTCAGGATCGTAGAGACATGGTTAGAGACTTCCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACTAGAGCTGGTGGGTTGGGCATCAACTTAACAGCTGCTGACACAGTCATATTTTATGAAAGTGATTGGAATCCAACATTGGATCTACAAGCAATGGATAGAGCTCACCGTTTGGGTCAGACAAAAGATGCCCGGATTGGTCCAATCGGGTACAGGAAAATAGCCCAATTATATTTGGGTAGTGGTGGTCCTAGTCGGCCCATGCTTCAGTGGCCATGTTCTGCAACTGGCCCAATCAGGCCAGAACAAAAAGCCTGGGTTTTTGGACTAAACTTCCCCTACCCTGGCCCGATTTTTAATGGGTATAAACAGGCTGACCCTTTTGTGGTTACTGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGCCAGAAAAGTACTGTACAGAACCTTGTTATGACTGGTGGCTCTGTTGGTGGTGATATTCTAGCTCCCGAGGATGTTGTGTCTTTGCTTCTTGATGATCCGCAATTGGAACAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAGAAAACAATCTTTAAAGGGTATAAGGTTAAGTGAAGAAGGTGATGCATCTCTAGAAGATCTTACAAACTCTGAAGTCCAGGGCACTACAAATATTGATCTTCCCATGGAACCAGAGGGACCTAAGTCCAGTAATAAAAAGAGAAAAGTTGGTGTTGACAAGCAAATTTCAAGGCCAAAGAATTCTCAAAAAAGGAATGAACTTGGCAATATGGCCATAGATGATGAATTGAATGATGTCCATCTAAATACCAATCCTTTGGACCACACACCAAAGAGAACCAAGAAGAGGACAAAGAAGAATGTGAATGAAAAGTGTGAAGAGGTTTTTACTGGGACAACTACCACATTCTCAAACCAGACCCATTTTCCTCCTCATAAGTAA 4647 0.4188 MDHRTKPNHSLSHSTLFNLESLMNFQIPQRDGDFDCCGNSSQDDESRDNQGGGAIANHSNGSVHGMDVSLSKKRVWSQNSDDEEKNDFDGTYVTEERYRSMLGEHVQKYKRRFMDTSSSPAQNRIAVPVVKSSTSFQGQKMGNDHRGGLHAAKTTSKWLYDSNSQKQGNHRGADFMPRCGTDRIMYEPASLDIGDGITYRIPPIYDKLATTLNLPSFSDIHVEEFYLNGTLDLGSLAAIMAADKRSGTRNQAGMGEPIPQYESLHARLKAMSAANSPHKFSLKVSDVGLGSSIPEGAAGSIRRSIMSEGGVLQVYYVKVLEKGDTYEIIERSLPKKHKVTEDPALIEKEEIERIGKVRMKVSRSHKWIKGASIRTRKIARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYGHFMQNKSNLLSSEAPMAVEKTNDQDTPVDSSDTGPNEDPEEAELKKQALKAAQEAASKQRTLTSTFDSESLRLRQAGESDSLLPEVAGATNIDLQTPSTMPATSTVQTPELFKGRLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPDIKRLPYWGGLSERTILRKSINPKDLYRREAKFHVLITSYQLLVSDEKFFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFTCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTMKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPDLFERSEGSTFFYFGEIPNSLPPPPFGELEYIYYPGGHNPVSYEVPKLVYQEIMQSSETLSSAVGRGVYRESFQKHFNIFRPENIYRSIFSEDRVVKCGNFGFTHLIDLSPHEVAFLATCSFMEQLLFSMMRCEQNFLDEAVDFLMNTIIDDSECSYLEKGKVKTVTRMLLLPSRSGNKFLQRRFATGPTQAPFEALIVPHLDRLVSNARLLHNAYTYIPPTRAPPIGIHCSDRNFSYKMIEELHDPWVKRLFVGFARTSKSNGPRMPDHPPHHLIQEIDSELPVSQPALKQTHNIFGSSPPMRSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDARIGPIGYRKIAQLYLGSGGPSRPMLQWPCSATGPIRPEQKAWVFGLNFPYPGPIFNGYKQADPFVVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDILAPEDVVSLLLDDPQLEQKLKEIPLQVKDKQKRKQSLKGIRLSEEGDASLEDLTNSEVQGTTNIDLPMEPEGPKSSNKKRKVGVDKQISRPKNSQKRNELGNMAIDDELNDVHLNTNPLDHTPKRTKKRTKKNVNEKCEEVFTGTTTTFSNQTHFPPHK 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1167 1548 SMART ultradead3 547 742 IPR014001 -
Lal24g1167 1548 SMART helicmild6 1196 1279 IPR001650 -
Lal24g1167 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 779 IPR027417 -
Lal24g1167 1548 CDD SF2_C_SNF 1158 1286 - -
Lal24g1167 1548 Gene3D - 1135 1292 IPR027417 -
Lal24g1167 1548 Gene3D - 1347 1446 IPR027417 -
Lal24g1167 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1286 IPR027417 -
Lal24g1167 1548 MobiDBLite consensus disorder prediction 43 64 - -
Lal24g1167 1548 Pfam DNA-binding domain 327 443 IPR020838 GO:0003677
Lal24g1167 1548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 563 734 IPR014001 -
Lal24g1167 1548 ProSiteProfiles DBINO domain profile. 319 444 IPR020838 GO:0003677
Lal24g1167 1548 MobiDBLite consensus disorder prediction 454 468 - -
Lal24g1167 1548 Pfam SNF2-related domain 566 853 IPR000330 GO:0005524|GO:0140658
Lal24g1167 1548 MobiDBLite consensus disorder prediction 454 498 - -
Lal24g1167 1548 MobiDBLite consensus disorder prediction 1423 1524 - -
Lal24g1167 1548 MobiDBLite consensus disorder prediction 1461 1482 - -
Lal24g1167 1548 Gene3D - 523 804 IPR038718 -
Lal24g1167 1548 PANTHER CHROMATIN-REMODELING ATPASE INO80 356 1525 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal24g1167 1548 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 359 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal24g1167 1548 PANTHER HELICASE SRCAP-RELATED 356 1525 - -
Lal24g1167 1548 PANTHER HELICASE SRCAP-RELATED 16 359 - -
Lal24g1167 1548 MobiDBLite consensus disorder prediction 33 64 - -
Lal24g1167 1548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1170 1313 IPR001650 -
Lal24g1167 1548 Coils Coil 391 430 - -
Lal24g1167 1548 MobiDBLite consensus disorder prediction 1423 1437 - -
Lal24g1167 1548 Pfam Helicase conserved C-terminal domain 1170 1279 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1167 Lal-Chr24 12725303 12737778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1167 572 853 RAD5 or RAD16-like Gene Family AT5G43530 29.664 1.39e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal24g1167 SNF2_N 7.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1167 K11665 - gmx:100796167 2109.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1167 24 12725303 12737778 Lal24g1167 24 12725303 12737778 ECH