Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1162 ATGTTGTTGTTGGGTTCAGTAGAAAAGGAAGGAAATTTGAGAGAAGAAGAAGGAGGGAATAAGAAGAAAAAGAATAAGAAAAATATGGGAAGAGGGAAAATTGAGATAAAGAAGATTGAGAATTTGAATAGCAGACAAGTAACATTCTCAAAAAGGCGTAATGGGTTGATGAAAAAAGCAAGAGAGTTATCTGTTTTGTGTGATGCTGAGGTTGCTGTCATAATATTTTCTAGCACCGGGAAGCTTTATGAGTTTTCCAATACAAGCATGGAGCATACCCTTTCAAGGTACAGCACAGGCCTAGATTTGGAATGTGGAGAACAATCTAGTGATGAAATTCCAACAATGGTTATAGAGCCTGATTCAAACCTTTTGAAGGATGAATTAACAAAGCTTCGTTCAGCATACTTAAGGATGATAGGTAAGGAACTTGATGGATTGAGCCTTAAAGAACTGCAACACCTAGAAAATCAACTGAATGAAGGGATACTTGCTGTTAAAGACAAGAAGGTAGGATTTTTGGCTCATGATAACCAGAAAGAAGCTGAGACTGTGGCTCTGATACCATTTAAAGTTTCATCTCAAAATCAATTAACAATAATGGGAATAGCTCAACAGGAACAAGTACTTCTAGAACAGCTTAGTAAGTCCAGATTACAGGAACAAAAGGCCATGTTGGAGAATGAATCTCTTAGAAAACAACTTTTGGAAATGGAAAAGAGTACAAGGTCACAATTTCTTCAGCTTAATTCTTTAGATAGGACTAATACCATAAACTGTTCAAAACTCCTTTCCAATTATGCTTCAGAGGACAATGAACTTTCAGATGCATCCTTGCAGTTAGGGTTGTCAACAGATTATGGTGGCAATAGGAAAGCATTGAAGATAGAACCATGTAATGGCTCAGGGAGTCAAGTGGCATCACAGTGA 930 0.372 MLLLGSVEKEGNLREEEGGNKKKKNKKNMGRGKIEIKKIENLNSRQVTFSKRRNGLMKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSTGLDLECGEQSSDEIPTMVIEPDSNLLKDELTKLRSAYLRMIGKELDGLSLKELQHLENQLNEGILAVKDKKVGFLAHDNQKEAETVALIPFKVSSQNQLTIMGIAQQEQVLLEQLSKSRLQEQKAMLENESLRKQLLEMEKSTRSQFLQLNSLDRTNTINCSKLLSNYASEDNELSDASLQLGLSTDYGGNRKALKIEPCNGSGSQVASQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1162 309 SUPERFAMILY SRF-like 30 101 IPR036879 GO:0003677|GO:0046983
Lal24g1162 309 CDD MADS_MEF2_like 30 97 IPR033896 GO:0000977|GO:0045944
Lal24g1162 309 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 29 172 - -
Lal24g1162 309 Coils Coil 219 241 - -
Lal24g1162 309 MobiDBLite consensus disorder prediction 11 30 - -
Lal24g1162 309 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Lal24g1162 309 Pfam K-box region 123 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal24g1162 309 PANTHER MADS BOX PROTEIN 29 172 - -
Lal24g1162 309 Gene3D - 41 111 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1162 Lal-Chr24 12674193 12678640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1162 29 291 MADS-box Gene Family AT5G13790 42.379 4.37e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal24g1162 K-box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1162 - - lang:109353632 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1162 24 12674193 12678640 Lal24g1162 24 12674193 12678640 ECH