Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1154 ATGGAGAAGATGGCACTCACAACCCAAACCTCTTTCTTCTCAACTACTACACTTCCTAAGTCTTCTTTCTTCTCTAACAAACTACTTTCTTCTTTCCCTTTATCTTCTTCTTATTCATTTTCCACTAAACAACACTTCAAACTTGTTTCTCCTACACCCATCAAATGCTCTATTTCTGAAGCCACTGAACCCATCATAACTGAGAAGAAGAAGCAATTGATGAGACGAGGAGATGTAAGAAACATAGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTAGTCGATGCCATGCTGAAACAAACAAAGGTATTTCGTGATAATCAGTTCGTACAGGAAAGGATAATGGACTCAAACGATTTGGAGCGTGAAAGAGGAATCACAATACTAAGCAAAAATACATCAGTTTCCTATAAAGACACAAAGATTAATATAATAGATACTCCTGGTCACTCTGATTTTGGAGGTGAAGTGGAGCGTATCTTAAACATGGTGGAAGGAATCCTTCTTGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACCAGATTTGTCCTAAAGAAGGCTTTAGAATTTGGGCATGCAGTTATTGTGGTTGTCAATAAGATAGACAGGCCTTCTGCTCGCCCAGAGTTTGTCGTCAATTCTACTTTTGAACTTTTCATCGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATACAAGGAAAAGCAGGTTTGTCTCCTGAAAATCTGGCAGACGACCTTGGGCCATTGTTTGAATCCATCACCAGATGCATCCCTGGACCACACATTGAAAAAGATGGTGCACTTCAAATGCTTGCTACAAATATTGAGTATGATGAACATAAAGGGCGAATAGCAATTGGGCGCTTGCATGCAGGAGTTTTAAAGAAAGGTCTGGATGTCAAGGTATGTACTTCAGAAGATTCATGCAGATATGGAAGAATTGGTGAGCTTTATGTGTATGATAAATTCAATAGGGTCCCTGTAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATCGGTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTCTTTGGGAAGCCGCTACCTTCCATCAAGGTGGAAGAACCGACTGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTCGGCCGTGAGGGAAAGTATGTTACAAGTAGGAACTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCAGATACATTCATTGTTAGTGGGCGTGGAACCTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGACAAATTGCTGGAACCGTATGAGATTGCAACAGTGGAGGTACCAGAAGTACACATGGGAGCTGTTGTTGAACTTCTAGGCAAGAGACGAGGGCAAATGTTTGATATGGAAGGAGTTGGATCGGAGGGAACTACGCTACTAAAATATAAGATCCCAACTCGTGGTCTTCTTGGATTGCGGAATGCAATATTAACTGCTTCCCGAGGGACAGCTATTTTGAATACTCTCTTTGATCGCTATGGGCCTTGGGCTGGTGACATGAGTACTCGGGATCAAGGGTCACTGGTTGCTTTTGAGGGTGGAACAAGTACTTCGTATGCAATCTCTAGCTCACAGGATCGAGGCCAGATGTTTATCGGTCCTGGAATCGATGTTTATAAAGGTCAAATCATCGGCATCCATCAGCGACCTGGTGACTTGGCTTTGAATGTTTGCAAGAAAAAGGCTGCGACAAACATACGATCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACACCGCAAAGTATTCGAATGTGCAAGAATCCTAAATTTTCGAAGAAAACAAGGTAG 2016 0.4137 MEKMALTTQTSFFSTTTLPKSSFFSNKLLSSFPLSSSYSFSTKQHFKLVSPTPIKCSISEATEPIITEKKKQLMRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVSYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVIVVVNKIDRPSARPEFVVNSTFELFIELNATDEQCDFQVIYASGIQGKAGLSPENLADDLGPLFESITRCIPGPHIEKDGALQMLATNIEYDEHKGRIAIGRLHAGVLKKGLDVKVCTSEDSCRYGRIGELYVYDKFNRVPVESVEAGDICAVCGIGDIQIGETIADKVFGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEVHMGAVVELLGKRRGQMFDMEGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTLFDRYGPWAGDMSTRDQGSLVAFEGGTSTSYAISSSQDRGQMFIGPGIDVYKGQIIGIHQRPGDLALNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKFSKKTR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1154 671 SMART EFG_C_a 469 558 IPR000640 -
Lal24g1154 671 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 PRINTS GTP-binding elongation factor signature 125 133 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 Pfam Elongation factor G C-terminus 470 554 IPR000640 -
Lal24g1154 671 Pfam Elongation factor Tu domain 2 293 362 IPR004161 GO:0005525
Lal24g1154 671 Gene3D Translation factors 273 373 - -
Lal24g1154 671 Gene3D bipa protein 557 636 IPR042116 -
Lal24g1154 671 SUPERFAMILY EF-G C-terminal domain-like 472 587 IPR035647 -
Lal24g1154 671 CDD BipA_III 379 457 - -
Lal24g1154 671 Pfam Elongation factor Tu GTP binding domain 79 269 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 Gene3D Elongation Factor G (Translational Gtpase), domain 3 380 663 - -
Lal24g1154 671 TIGRFAM small_GTP: small GTP-binding protein domain 80 228 IPR005225 GO:0005525
Lal24g1154 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 279 IPR027417 -
Lal24g1154 671 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 272 IPR000795 GO:0003924|GO:0005525
Lal24g1154 671 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 67 671 - -
Lal24g1154 671 CDD TypA_BipA 78 271 - -
Lal24g1154 671 PANTHER BNAC09G43450D PROTEIN 67 671 - -
Lal24g1154 671 SUPERFAMILY Translation proteins 225 372 IPR009000 -
Lal24g1154 671 CDD BipA_TypA_II 279 372 - -
Lal24g1154 671 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 118 133 IPR031157 -
Lal24g1154 671 CDD BipA_TypA_C 472 551 IPR035651 -
Lal24g1154 671 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 79 666 IPR006298 GO:0005525
Lal24g1154 671 Gene3D - 463 556 - -
Lal24g1154 671 Gene3D - 77 272 IPR027417 -
Lal24g1154 671 SUPERFAMILY EF-G C-terminal domain-like 377 461 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1154 Lal-Chr24 12579017 12588640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1154 79 206 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 8.59e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1154 K06207 - gmx:100785222 1153.27