Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal24g1146 | ATGGCGTCCAAAGGTCCTAGGTCTAAGATTGATCATCATGACACAAAAGCTAAACGCCAAAAGGCGCTTGAAGCTCCAAGGGAGCCTAGGCGACCTAAAACTCATTGGGACCATGTCTTAGAAGAGATGGCGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCACAGGCGAAGAAAGTTGCTTTAAGAGCTAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAAATGAAGGAAGAAGAGCAGCGGGTAAGAAAAGTCGCACTGAGTATATCCAAAGATGTTAAGAAATTCTGGACGAAAATAGAAAAGCTGGTTCTTTACAAGCACCAAATGGAGCTTGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTCTTGGGGCAAACTGAGAGGTACTCCACAATGTTGGCCGAAAATCTTGTGGATGCTTATAAACCACAAAAGCAGAATTCTCCGGAGCAAATATGTACAGAATACAAGGATGTCGATGGAGACATTACTAAAGAAGCTAAGGAAGTTAATGTTGAAGAGTATCCATCAGATGCACCTGAGAATGATGAAGAATATGATGTACAATCTGATGATGAATCGGTGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAAGAAAGGAAAGAGGAATTGGCAGCTTTGCATGATGAAATTGATCTTCCAATTGAGGAGTTACTAAAACGTTATGCTGGAGACAAAGGAGAACCAGTAAGGCAAGAAAGTAGTCCAGAGCATAGTAAAGATGCTGGGCAAATAATTAGAGCTGATGATGGTGATGGTAAGGACCAGCATCTGGACGAAAGTAATGGTGATGAAGCTACACAAGCAAACAATCTATCTCAATATGAGGACCATCAACCTGAAAATCCTAGTGAGGTTCCCAGTGAGATGGCCAATAAAAGTATTGCGTATGACTTTAATGATGAAGAGGAAGATGCTGACTTCTTGCTTGGAACAGAGGATAAGGATGACGAAACAACCTTATCCGAGGAGGAAAAACTGGAAAGGGTTGACACAATTGATCCAATGGATGAGATTGCATTATTGCACAAGGAGAGTGAGATGCCTGTTGAGGAACTCCTTGCAAGGTATAAAAAGGATCTTGGTGATAATGAAGATTGGGAAGATGATTCTGATGCTTCTTCTTTATCAGAGGATCATCGGGATTCTCCAGTTCACGAGGAAGCTGGAGCTGCTGTTTCTATGAATGAAGATATCAAGTCTGGTGAGCACCTGGCTATTTTACAGTCCCAGACAGAAGAACAATGGGAAGCACCTCCCGAGAATTCCGAAAAAACAGAAAGTGAGTATATAATTGCTGACGCTGCTGCTGCTGCAAGATCAGCACAACCAACCGGAAACACCTTCTCCACAACTAAAGTACGTACGAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACGATGTATGAAAAACGACTGAATGGAATTTTAGCAGATGAAATGGGGCTTGGAAAAACAATCATGACTATAGCTTTGCTTGCACATCTGGCTTGTGAAAAGGGGATTTGGGGCCCACATCTAATTGTGGTACCAACAAGTGTAATGCTTAACTGGGAGACTGAATTTTTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGCGCAAAGGAGAGAAAACATAAAAGACAAGGATGGTTGAAACAAAACTCGTTTCATGTATGCATAACAACTTATAGACTAGTAATTCAAGATTCTAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGGTGGCAGACACTCTTGAATTTTAATTCGAAACGACGTATTCTCTTGACTGGTACACCACTGCAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAAGAGTTTAAGGATTGGTTTTGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTGCTGCGTCGATTAAAGCGAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATAAACTGTCGATTGTCAAAGAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTAAGCTCTTTTGATATGTTGGGTATTGATATTCAGTTAAGCTCTTCTGTTTGCTCAACTCTTTTGCCCAGTACCTTTTCTACAGTAGACCTTAGAGGTTTAGGTCTTTTATTTACTCATCTTGATTATAGCATGACTTCTTGGGAAAGTGATGAAATCCAAGCTATTGAGACCCCTACAAGTTTAATCATGGAACGTACTAATGTGGATGACCTGGAAGTGATTAAGCCTGGACTGAAATCTCAAAAAAAGCTGCAAGGGACAAACATTTTTGAAGAGATCCAAAGGGCAATATGGGAAGAAAGATTAAGACAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATTTACTCAACCACCCTAAGGGATCTTGTTAGCATAAAGCATCCTGTATATGATATTCATCAGGTGAAGGCAAACCCTGTTTCATACTTGTACTCAACAAAGCTGGCTGACATTGTTCTTTCCCCAGTTGAACGATTTCAAAAGATGACTGCTGTGGTTGAAAGTTTCATGTTTTCAATCCCAGCTGCACGAGCGCCTTCCCCTGTTTGCTGGTGTAGTAGAATTGAGACACCCGTGTTTCTGGATTCATCTTACAAGGAAAAATGTTCTGAAGTTCTGTCACCGTTACTGTCACCTATCAGGCCTGCAATTGTGCGCCGGCAAGTGTATTTCCCAGACAGGCGTCTAATACAATTTGACTGTGGGAAACTGCAGGAGCTAGCAATTTTGTTAAGGAAATTAAAATCAGAAGGTCATCGAGCTCTGATATTTACCCAGATGACAAAGATGCTTGATATATTAGAAGCATTCATTAATTTGTATGGTTATACTTACATGAGATTAGATGGATCAACTCAACCAGAGGAAAGGCAGACCTTAATGCAGCGTTTTAACACAAATCCCAAATATTTTCTTTTCATATTGTCGACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACAGTGATATTTTATGATAGCGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTTAAGAAGCTTGATCCGATTGAACTGTTTTCAGGTCATAGAGCACTTTCTGTGAAAAATATCCAGAAGGAGAAACACCAGAACAATGGAGAAGTTTCTGTAACCAATGCAGAGGTAGAGGCTGCATTAAAAGATGTAGAAGATGAAGCAGATTATATGGCATATAAGAGAGTTGAGCAGGAAGAAGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGTTAATGAGGATGATATGAAGGATGATGAGCCTGTTGAATTCGGTGAATCTGTTCCCAGTTTAAGTAAAGAGAACTTGTCAATGTTAAATGGTAATGATCCTACGGAAGATAGACCACCCTCTGTTCCTAACAAAGAAGATGATGTTGACATGATTGCTGATGTCAAGCAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCAATCACAGTGTTTGAGAGTGAGCTACGTCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTGTGGGATCCAATTATAGATAAAACTTCCTTGGAATCTGAAGTAAGGATTGAGGACACAGAATGGGAGTTGGATCGCCTTGAAAAGTTTAAGGAGGAGATGGAGGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGTTGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTGGAGGCCTTAGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAAACAGAAAGAGAAAGCTGAGGAAGAAAATTGTGATTCTAAAATGACTCAAACGCCAAGTGATTCAAAGCCCAAATCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCGTTAACATCTGGCTTGAGATCTGCAAAACAAGAGCCACAAGCGGAGACAATAACTCTAGATGATGAGGATGGCAACAGCTTGGCTTTTGTTTCTCCAGAGTCAACTTCGCAGAAAAAACGTAAGATATCGAAGCCAACAACTGATTGTGAAGAAAAAAGACTGAAGAAGTCCAAAAAGATGAAGAGAAAGTCTCCTGACATTTGTGCTTCAGATTTAGATTCCAACTCATTAATTGTGCTGGATGAACATGCAGAGTCAAAGCTGTGTGAAAGTCTGGTTGATTTTGAACAGAGAATGGCAGGCAGGAGTAAGATGGGAGGAAAAATATCCATTACTCCAATGCCAGTGAAACGGATATTGGTGATAAAACCGGAAAAACTGAAGAAGGGAAATCTTTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGTTGCCTCAGGAAGATGCAATATTATGTGCCATAGTTCATGAATATGGTTCTAACTGGAATTTGGTTAGCGAAACACTTCATGGCATGACTGCAGGGGGGACATTCAGGGGGAGATATCGCCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAGCTATTCCAAAAATATGTCTTGCACTCGACCGACAATGCAAATCATGAAAAGATCAGCAATACCGGCTCAGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGCCAAACAGAGAGTTACTACTGCAGAAACATTTTTTCGCATTGCTGTCATCAATCTGGAAGGTGTCATCACATGTTGACCGCAGGCAAAATCCATCACCTACTTGTAATGGTCTATATTTTGATCAGAGTTTCTTTACTTCCATTGGCCAACAATCACAGAATTCCTTGAAGAAACCCTCTGAAAGGATGATGTTTACTAATCTGGCCCAGAGCAAGAAATTAATAGCTGCTGCACTTGATGACACAATAAGTAGGCCAGAGAGTGACAAAATCTTCCCAGCTAATCAGGCTGAAGACATGCCATTGAGTGCAGATAAGCTGGATATAACATTGGAGTTCCAGAAAGAGGAGAGTGATACCTTATCTTTATTTCCATCTGTTATAAATTTATCAATAGATGGGATTGAAGCATTGCCATCTTTAAATAAACAAACAGGAGAATGTGACCATCTCAGAGGTTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGATGCATCAAAAACTTGTGCGGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCTACAAACGATTCAAGGTCTCAACCTGGATCCAGGATACAATCATCGGGAAAGCAAAAAACTTCAATCTCTGACACAACTAAGTCGTCGAAGTCGAAGTCGAAAAGAGTTTCAATGGATCCCAGTGACATGCAACAGGCTGAGCCATTACTCCAGTCAATACCACCACTTAAGGAACTGAGGTTTGATCTTACTACATCTACTATGGATATAGTTGGAATTGATGAAATTGATAACAATCCCCCCTTTGGTTTGCATTTGGAAAATTCATTGGAAACGGAGAGTTCTGATGCGGTCCCACATGATTATCTAGATGGTTTAATCTTTGGCCTTGATGATTTAATTGAATTCCCTGAATACACTGACATTAGATAG | 6081 | 0.4078 | MASKGPRSKIDHHDTKAKRQKALEAPREPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRVRKVALSISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAYKPQKQNSPEQICTEYKDVDGDITKEAKEVNVEEYPSDAPENDEEYDVQSDDESVDDEQTLEEDEALITEEERKEELAALHDEIDLPIEELLKRYAGDKGEPVRQESSPEHSKDAGQIIRADDGDGKDQHLDESNGDEATQANNLSQYEDHQPENPSEVPSEMANKSIAYDFNDEEEDADFLLGTEDKDDETTLSEEEKLERVDTIDPMDEIALLHKESEMPVEELLARYKKDLGDNEDWEDDSDASSLSEDHRDSPVHEEAGAAVSMNEDIKSGEHLAILQSQTEEQWEAPPENSEKTESEYIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKQNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVINCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMLGIDIQLSSSVCSTLLPSTFSTVDLRGLGLLFTHLDYSMTSWESDEIQAIETPTSLIMERTNVDDLEVIKPGLKSQKKLQGTNIFEEIQRAIWEERLRQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVSIKHPVYDIHQVKANPVSYLYSTKLADIVLSPVERFQKMTAVVESFMFSIPAARAPSPVCWCSRIETPVFLDSSYKEKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPIELFSGHRALSVKNIQKEKHQNNGEVSVTNAEVEAALKDVEDEADYMAYKRVEQEEAVDNQEFTEEAIGRLEEDEYVNEDDMKDDEPVEFGESVPSLSKENLSMLNGNDPTEDRPPSVPNKEDDVDMIADVKQMAAAAAAAGQAITVFESELRPIDRYAIRFLELWDPIIDKTSLESEVRIEDTEWELDRLEKFKEEMEAEIDEDEEPLVYESWDADFATEAYRQQVEALAQHQLMEELEYEAKQKEKAEEENCDSKMTQTPSDSKPKSKKKPKKAKFKSLKKGSLTSGLRSAKQEPQAETITLDDEDGNSLAFVSPESTSQKKRKISKPTTDCEEKRLKKSKKMKRKSPDICASDLDSNSLIVLDEHAESKLCESLVDFEQRMAGRSKMGGKISITPMPVKRILVIKPEKLKKGNLWSKDCIPSADFWLPQEDAILCAIVHEYGSNWNLVSETLHGMTAGGTFRGRYRHPVHCCERFRELFQKYVLHSTDNANHEKISNTGSGKALLKVTEDNIRMLLDVASEQPNRELLLQKHFFALLSSIWKVSSHVDRRQNPSPTCNGLYFDQSFFTSIGQQSQNSLKKPSERMMFTNLAQSKKLIAAALDDTISRPESDKIFPANQAEDMPLSADKLDITLEFQKEESDTLSLFPSVINLSIDGIEALPSLNKQTGECDHLRGCFSAAENRFRDASKTCAEDSSGWASSAFPTNDSRSQPGSRIQSSGKQKTSISDTTKSSKSKSKRVSMDPSDMQQAEPLLQSIPPLKELRFDLTTSTMDIVGIDEIDNNPPFGLHLENSLETESSDAVPHDYLDGLIFGLDDLIEFPEYTDIR | 2026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal24g1146 | 2026 | CDD | DEXQc_SRCAP | 492 | 714 | - | - | |
| Lal24g1146 | 2026 | PANTHER | HELICASE SRCAP-RELATED | 14 | 1937 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 289 | 315 | - | - | |
| Lal24g1146 | 2026 | Gene3D | - | 1007 | 1252 | IPR027417 | - | |
| Lal24g1146 | 2026 | SMART | ultradead3 | 488 | 681 | IPR014001 | - | |
| Lal24g1146 | 2026 | Pfam | Myb-like DNA-binding domain | 1625 | 1680 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1518 | 1536 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 326 | 347 | - | - | |
| Lal24g1146 | 2026 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 504 | 669 | IPR014001 | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 388 | 414 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 181 | 358 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 189 | 223 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1439 | 1453 | - | - | |
| Lal24g1146 | 2026 | Pfam | SNF2-related domain | 509 | 781 | IPR000330 | GO:0005524|GO:0140658 | |
| Lal24g1146 | 2026 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 451 | 714 | IPR027417 | - | |
| Lal24g1146 | 2026 | Gene3D | - | 1621 | 1682 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1893 | 1952 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1439 | 1542 | - | - | |
| Lal24g1146 | 2026 | Pfam | Helicase conserved C-terminal domain | 1036 | 1146 | IPR001650 | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1275 | 1316 | - | - | |
| Lal24g1146 | 2026 | PANTHER | HELICASE SRCAP | 14 | 1937 | - | - | |
| Lal24g1146 | 2026 | Gene3D | - | 461 | 738 | IPR038718 | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1481 | 1495 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1292 | 1306 | - | - | |
| Lal24g1146 | 2026 | Gene3D | - | 739 | 818 | - | - | |
| Lal24g1146 | 2026 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 716 | 1216 | IPR027417 | - | |
| Lal24g1146 | 2026 | ProSiteProfiles | Myb-like domain profile. | 1625 | 1678 | IPR001005 | - | |
| Lal24g1146 | 2026 | Coils | Coil | 1377 | 1397 | - | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 224 | 288 | - | - | |
| Lal24g1146 | 2026 | SMART | bromneu2 | 24 | 95 | IPR014012 | - | |
| Lal24g1146 | 2026 | Coils | Coil | 1428 | 1448 | - | - | |
| Lal24g1146 | 2026 | ProSiteProfiles | HSA domain profile. | 23 | 97 | IPR014012 | - | |
| Lal24g1146 | 2026 | SUPERFAMILY | Homeodomain-like | 1623 | 1685 | IPR009057 | - | |
| Lal24g1146 | 2026 | SMART | helicmild6 | 1063 | 1146 | IPR001650 | - | |
| Lal24g1146 | 2026 | MobiDBLite | consensus disorder prediction | 1893 | 1930 | - | - | |
| Lal24g1146 | 2026 | CDD | SF2_C_SNF | 1022 | 1157 | - | - | |
| Lal24g1146 | 2026 | Pfam | HSA domain | 28 | 94 | IPR014012 | - | |
| Lal24g1146 | 2026 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1037 | 1187 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal24g1146 | Lal-Chr24 | 12453898 | 12477182 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal24g1146 | 512 | 784 | RAD5 or RAD16-like Gene Family | AT5G43530 | 30.124 | 2.40e-28 | 123 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Lal24g1146 | SNF2_N | 1.5e-69 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal24g1146 | - | - | aprc:113871102 | 3130.89 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal24g1146 | 24 | 12453898 | 12477182 | Lal24g1146 | 24 | 12453898 | 12477182 | ECH |