Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1104 ATGACAACTTCATGGGCGGATTCTGTTGACAATTCAGCCAATGCCTCGGCACGCCCTACCCGATCGGCGTATGTTCCTCCACATCTTCGCAACCAGACGTTGTCTTCGGAGCCCCCAGCTGCGGCAGCATCTTACTCGTCTTCGGTGGCGGCTAGTGATCATGTGAGTTATGGTGGTCAGGGTGCTGGTTCTCATGGGAGTATATCCTCTAAGCCTGATATCGGGCGCCAGGGATATGGTTCCAATGTTCAGATTGGTGGTGGTGGTGGCTGGAATGGTAGAGGGATAGGGAGGGACCGTGGGAGACGTGAGGTGAACCCTTTCGAGAACAATGAACCTGTGGATCAATCTGTTGATGAGCAAGAGAACACTGGCATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGATAATGTGCCTCCACCTGTAAATACGTTCGCAGAAATAGATTTGGGTGAGGCGTTGAACCAAAACTTACAGAGGTGCAAGTATGTCAAACCAACTCCAGTTCAGAGGTATGCCATACCGATTTCTCTCGCGGGGAGAGATTTGGTAGCCTGTGCTCAGACAGGGTCTGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATAATGAGGGAGCAGTATGTTCAAAGACCACGTGTAGCACGAACTGCTTTCCCTATGGCCCTTATCCTCGCCCCTACTCGGGAGCTTTCTTGCCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTACTTATGGAGGAGCACCAATCAACCAACAGTTGCGGGAGCTTGAGAGGGGAGTTGATATTCTAGTGGCAACTCCTGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATAATAAGATATTTGGCACTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAGATGGACATGCCCCCTCCTGGCATGAGACAGACTTTGCTGTTCAGTGCCACATTTCCCAAAGAGATACAGAGATACCAAGAAAATCAAAGGGACTTACACATGATTTTCATTGATTTGGAGAATGCATATGGTAAGATGCCTACAGAGGGACTTGCATCAGATTTTCTTTCAAACTACGTGTTTCTTGCCGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGTTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTCCATGCTCAGAGGGAAAATGGAACTCATGGAAAGCAAAGTCTGACATTAGTTTTCGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCATTTAAGAGTGGAAACACACCAATTTTAGTAGCCACAGACGTTGCTGCACGTGGCCTTGACATTCCACGGGTAGCACATGTGGTAAACTTCGATCTTCCCAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGCGAGCTGGGAAAATGGGATTAGCAACAGCCTTCTTCAATGAGAGTAATTTGTCCATGGCTAAACCATTGTCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTCACACGTTATGCAGCGAGGGCTTCTTACGGTGGCGGCAACCGAAACAGGCGGTCAGGGGGAGCCCGTTTCGGTGGCCATGATTTTCGGAAGGAAGGTTCCTTTAATAAAGGAGGAGATTACTATGGTGGAACAGGTGGATATGGGGTTCCTGGAAATTATGGTGGAGGTGGTTATGGTCAAGGTGTGACCAGTGCTTGGGATTAG 1893 0.4712 MTTSWADSVDNSANASARPTRSAYVPPHLRNQTLSSEPPAAAASYSSSVAASDHVSYGGQGAGSHGSISSKPDIGRQGYGSNVQIGGGGGWNGRGIGRDRGRREVNPFENNEPVDQSVDEQENTGINFDAYDDIPVETSGDNVPPPVNTFAEIDLGEALNQNLQRCKYVKPTPVQRYAIPISLAGRDLVACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPMALILAPTRELSCQIHDEAKKFSYQTGVKVVVTYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQIIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRYQENQRDLHMIFIDLENAYGKMPTEGLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVLESDKRSHLMDLLHAQRENGTHGKQSLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSMAKPLSDLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGHDFRKEGSFNKGGDYYGGTGGYGVPGNYGGGGYGQGVTSAWD 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1104 630 MobiDBLite consensus disorder prediction 62 77 - -
Lal24g1104 630 Pfam Helicase conserved C-terminal domain 413 528 IPR001650 -
Lal24g1104 630 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Lal24g1104 630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 567 IPR001650 -
Lal24g1104 630 SMART ultradead3 167 376 IPR014001 -
Lal24g1104 630 Gene3D - 104 365 IPR027417 -
Lal24g1104 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 545 IPR027417 -
Lal24g1104 630 Pfam DEAD/DEAH box helicase 172 350 IPR011545 GO:0003676|GO:0005524
Lal24g1104 630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 363 IPR014001 -
Lal24g1104 630 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 377 600 - -
Lal24g1104 630 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 34 352 - -
Lal24g1104 630 MobiDBLite consensus disorder prediction 1 120 - -
Lal24g1104 630 MobiDBLite consensus disorder prediction 1 19 - -
Lal24g1104 630 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 377 600 - -
Lal24g1104 630 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 352 - -
Lal24g1104 630 MobiDBLite consensus disorder prediction 26 54 - -
Lal24g1104 630 Gene3D - 390 572 IPR027417 -
Lal24g1104 630 CDD SF2_C_DEAD 401 537 - -
Lal24g1104 630 SMART helicmild6 447 528 IPR001650 -
Lal24g1104 630 CDD DEADc_DDX3_DDX4 149 395 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1104 Lal-Chr24 11475170 11483037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1104 132 560 Eukaryotic Initiation Factors Gene Family AT3G19760 29.535 2.92e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1104 K11594 - gmx:100800039 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1104 24 11475170 11483037 Lal24g1104 24 11475170 11483037 ECH
Lal13g1217 13 10526036 10533447 Lal24g1104 24 11475170 11483037 LSH