Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1079 ATGAACGATTTATTTTCAGGCTCCTTTTCACGCTTCCGAAACGAGCAAGTCTCACCGGACCACGTCATTCAAATGACGGCGGTTACACCGTCGTCACCGCCAACCACCGACCGCGTCAACCTGGACATGTTCTTTGACGAAGTTGAGTCAGTGAAAGAGCAGCTGAAGGAGCTGGAACATCTACACGAGAACCTGCGAGGGTCCCACGAGAAGAGCAAGACCGTTCACAGCGCCAAGGCTGTGAAAGACCTTCGGTCTAAAATGAACGATGATGTGTCTTTGGCTTTGAATAGAGCCAAACTAGTGATGGTCCGGCTTGAGGCACTGGACCGGTCCAACGAGGCAAGTCGGAGCTTGCCTGTTAGTGGACCGGGTTCGTCCTCAGACCGGACCAGGACATCCGTGGTAAGCGGATTGAGGAAGAAGCTGAAGGATTCTATGGAGAGCTTCAACAACCTGAGAGATCTGATATCGTCTGAGTACAGGGAGACGGTGCAGCGGAGATACTACACTGTCACGGGAGAAAATCCTGATGATAAAACCATTGATCTCCTCATCACTACAGGTGAAAGTGAAACTTTCTTGCAAAAAGCAATACAACAACAAGGAAGAGCTACAATCATTGACACAATCCAAGAGATTCAAGAGAGGCATGACTCGATGAAGGAGATAGAGAGAAATCTCAATGAACTGCACCAGGTGTTCATGGACATGGCAGTCTTGGTCCAATCACAGGGTGAACAATTGGACGACATCGAAAGCCACGTGGCGCGAGCCAATTCGTATGTTAGGGGTGGGGTCCAGCAGTTGCATGTTGCTAGGAATCATCAGAAGAATACCCGAAAGTGGACCTTCATAGCCATCATAATAGTGTTGATTATCATATTGATTATAGTACTATCTATTGTTTTGAAAAATTGA 921 0.4767 MNDLFSGSFSRFRNEQVSPDHVIQMTAVTPSSPPTTDRVNLDMFFDEVESVKEQLKELEHLHENLRGSHEKSKTVHSAKAVKDLRSKMNDDVSLALNRAKLVMVRLEALDRSNEASRSLPVSGPGSSSDRTRTSVVSGLRKKLKDSMESFNNLRDLISSEYRETVQRRYYTVTGENPDDKTIDLLITTGESETFLQKAIQQQGRATIIDTIQEIQERHDSMKEIERNLNELHQVFMDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARNHQKNTRKWTFIAIIIVLIIILIIVLSIVLKN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1079 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Lal24g1079 306 Pfam Syntaxin 44 246 IPR006011 GO:0016020
Lal24g1079 306 Gene3D - 199 305 - -
Lal24g1079 306 MobiDBLite consensus disorder prediction 113 135 - -
Lal24g1079 306 Gene3D - 39 171 - -
Lal24g1079 306 Coils Coil 211 231 - -
Lal24g1079 306 CDD SynN 41 198 IPR006011 GO:0016020
Lal24g1079 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 16 301 - -
Lal24g1079 306 MobiDBLite consensus disorder prediction 115 134 - -
Lal24g1079 306 SMART tSNARE_6 206 273 IPR000727 -
Lal24g1079 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal24g1079 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Lal24g1079 306 Pfam SNARE domain 247 299 IPR000727 -
Lal24g1079 306 CDD SNARE_syntaxin1-like 210 270 - -
Lal24g1079 306 PANTHER SYNTAXIN 16 301 IPR045242 -
Lal24g1079 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Lal24g1079 306 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1079 Lal-Chr24 11012719 11014718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1079 35 284 SNARE and Associated Proteins AT3G11820 72.000 8.49e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1079 K08486 - gmx:100808718 441.81