Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1072 ATGAGCAACACAACTGATACTTCTGGATTCCTTGGCAACAACAACATCAGCGGCGTTGGCTATGGCATAGGAATTTCAATTGGAGTTCTCCTCCTCATCACAACCATCATACTCACTTCCTACTTCTGCACCCGAGTACAGGTGTTGTCCGCTGCTTCTACTCGATGGAGAAACACCCCTGATCTCATTGAACCACAACACTCAGTAATCGACGTGGGGCTAGATGAATCCACAATTCTGAGTTATCCAAAGATTCGATACTCTGATGCCAAACTTAGAAAGTCGGATTGGACATCAACATGTTGCTCCATATGTCTTGCAGATTACAAGGCTAATGATATGCTTAGGGTATTGCCTGATTGTGAGCATCTTTTCCATCCAAAGTGCATAGACCCTTGGTTGAGGTTGCACCCTACATGTCCAGTTTGCAGAACATCTCCAATCCCAACACCTCTCTCTACACCTCTGGTTGAAGTTGTTCCATTAGCAAGAAGGCTAGGTTGA 504 0.4504 MSNTTDTSGFLGNNNISGVGYGIGISIGVLLLITTIILTSYFCTRVQVLSAASTRWRNTPDLIEPQHSVIDVGLDESTILSYPKIRYSDAKLRKSDWTSTCCSICLADYKANDMLRVLPDCEHLFHPKCIDPWLRLHPTCPVCRTSPIPTPLSTPLVEVVPLARRLG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1072 167 Pfam Ring finger domain 102 144 IPR001841 -
Lal24g1072 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lal24g1072 167 SUPERFAMILY RING/U-box 87 149 - -
Lal24g1072 167 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 165 - -
Lal24g1072 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 165 IPR045899 -
Lal24g1072 167 SMART ring_2 102 143 IPR001841 -
Lal24g1072 167 CDD RING-H2_PA-TM-RING 101 144 - -
Lal24g1072 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1072 Lal-Chr24 10956546 10958714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1072 14 165 C3H Transcription Factor Family AT5G06490 48.571 8.73e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1072 - - gmx:100811799 215.312