Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0987 ATGGTGAGGGATAATCTTGGTAGTACCAAAAAACTTACGGCCATGGAGAGTTCATATAGACCGTTGAATAGTTCGAGAGAACAACGGTGTCTGAAGAAGCCCCGATTGGTGGAACATGCTTCAAATAATTCCATTCTCCGACCGGTTCCTCAGAAACAAATGCCTTCTTCGGACATTACTACATTGTCATTTGCTACTAGGTTTAGAACAAACGACAGAGACTTGGAAAGCAGCGATTTTGACCGCGGCCATGGTGGATATCATCCGCAGCCGCCTGTGACACAGCAGGAGCTAGTGCATCAATACAATACAGCGCTCGCTGAGCTTACTTTCAATTCGAAACCGATAATTACAAACTTGACAATAATTGCAGGCGAAAACCAAACTGCGGCGAAGACCATTGCTGCCACTGTTTGTGCTCACATTATAGAGGTTCCCAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGAGATTATATAAAATACTTTGGTTCCAGACTACCTGAGGTATTCTGCAAGGCATACCGATATGTTGATCCTTCTGTCCGTCAAAGTATGAGGCATCTGTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGACTATTGAGAAGGAACTAGGCTTTGCTCCTGCAGTCAACAGCTCTGCTTCTGCATCTGCTACACTTAGGAGTGATTCACAGTCACATCCACTACAAAGCATTCATGTGAATCCCAAGTATTTAGAAAGGAAGCATTTACAGCAGTCCAGCAGGAGTAAAGGAGTTGTTGATGATATGACTGGAGCTATTTCATACTCAAATGAGGACCCAGAGAGGGCAGATAGAGCTTCGGGTGCTGCACGACCATGGGTTAATCCCAGTCTTAACATGCACTTATATGAAAATAATCAGCACTCTCATAGAAATGCATCAAATGATCCTGTTCCGGAAAAGAGCATTGGTGCATCCTATGGAGGCAATGAATATGGTTCTGATCTTTCAAGGAATTTGGGCTCGGGTATGGGCAGAACTGGTGGTAGGGTCACCGAGTCAGGACATGACAGAAGTTGGTTCAAAGCAGGTGGTGTTGCAGGGACAACATCTGTGAAACGGAATGGTTTCAGTCTCAAGCGTAATTTTTCCAAGATCGAGGAAGATCTTCAGCCAACACAGCACATGCCTAGCATACAGAACAGTCTGATATCAAGTAGCTGGAAACATTCTGAGGAAGAGGAATACATGTGGGATGATATGAACTTTGGATTGGCTGGTCATGGTGCACCCAAGTTCACTAACAATGGAAGCAAAGATCCTTGGACTGATAATGATGAAAATCTGGAAGTTGAAGATCACCTCCAAATCCAAAATCCTTTTCAAGCAAATGTTGATATGGAAGTGCCAACTGAATCTCTAGCCATTGAAAGAAGACAATTACTTGCATTTAAGCGTCATCCATCATTATCATTGCAAATGCAGGAACAGCACTCAATTGATGAGTTAAATCAGAAACCACATCAGTCAGAAGGATTTGCGTCCACTCTTGGTGGCTTAACAGGCAATACAATTTCTTCTGCTGCCAGGATAGGTAACCGGCCTTTCCTGCCAAATGCAACAATAGGATTGGCAGGAACTGTGGGACAACGTTTTCATCCTTTGGGAGCTGGATCCTCTTCCAGGCAGTCGCCTTTGCAACAAGAGTCTCCATCACCTCCAGTAAGTGCACACCACCACCCTCATCAAATGCAAGATTTGGCAGAGCAAGACCATCCTCAGACTCATAAAACATCTAAATTTTTGGGAGGTCTGCAGAACCAATATATTAAAGATTCCTTACCTAGCCTTCCTCCTATTGATCAAGATTGTAACTTGCGAAGTTCACAGCAAAAGAAGCTGCAGGCTCCATTTTGCTTGACAAAATCCTTTCAGCCACGGCATCCGCTGTTGCTGGGCTCTTCTCACACTGAAGTTATGGCTAAGACTGAGAAGCCTCCCATGTCTAAAGTTTCTCTATCCAGAAAAACTCCAGAACGGTCAACCACAAGTAGTTTGGAAGCTGCAACTGTGAAGAGTGCAATATTCTCCATCATGCCAATTACTAGCAGTCTTCCTACTACAAGTAGCCTGGACACAAGGAATCCTCCATCTAAATTAGGGGTTCGGTCTTCCTGGGCAGGTGGGCCTTCCCCTACCACATTAATTTCTTCAGTGTCTGCAATAATATCACCATCTTCATTAGGTCCTCATAATGATTATTCATCTGCTCTACCAAAAGTACCTCTACAAAAGGCTGGACAACCATCAAGGGTATCTACTCTGCAACCTGCTTCCTCTAATATCAGCAGCATCTCAACCCAGACAGTAAGTGCTACCAATAATACTGCAAATCCAATTGCAAACCTTTTAAGCTCATTAATTGCGAAGGGTATGATAACAGCAGAAACAGAGTCACCAGCTAAGGTGCCATCTGAGATGCTGTCTCGATTAGAAGATCAAAGCAAAAGCATTACCACGAGTAGTTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGCAGCGCTCCCAACACCTACCCAAGACATGGTAGATGATACTGCAAAAACCCCTATATCCTTATCTGAATCAGCCAGCACAGAAATCAGAGATTTTATTGGCTTTGAGTTTAAGCCTCGACTAATCCGAGAATTGCATCCACCTGTAATTAAAGGATTATTTGATGATCTTCCACATCAGTGTGGTGTGTGTGGCCTTAGGCTTAAATTCCAAGAAGAGTTTAATAGACATTTAGAGTGGCATGCCACAAGAGAAAGAGAACAAAATAGTTCAAGAAGATGGTATCCAAAGTCAAGTGACTGGGTCATTGGCAAGGCTGATGGTCCATCTGAGCATGACTGCTCTGATTATGTAGATACGTATAGCAAGGAAAACGACAGTTGTCAAGAGGATGTAATGGTTCCAGGAGATGAAAAGCAATGCTTGTGTGTATTTTGTGGTGAGCTATTTGAAGATTTTTACTCTCAGGAAAATGATGAGTGGATGTTCAAAGGGGCTATATACATGACTAACTCAGATAGCAATAGTGATTTGGGGATCGGAAAAGCGAGTACTGCAAGCGGTCCCATCATTCATGCAAGATGCGTATCAGAGAACATCATATCTAATAATAACATTAAGAATGAACAAAAGGAGTTTCCTTTGTGTTCAAAACATCTGCTTGCAGTACTGAGCAAAGCACCAAGGGTCATATTAATGCGGAAGCGACCGTTGCGCAGCGTTGGTCACAAACAATCAAATAATACATAG 3312 0.4318 MVRDNLGSTKKLTAMESSYRPLNSSREQRCLKKPRLVEHASNNSILRPVPQKQMPSSDITTLSFATRFRTNDRDLESSDFDRGHGGYHPQPPVTQQELVHQYNTALAELTFNSKPIITNLTIIAGENQTAAKTIAATVCAHIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFGSRLPEVFCKAYRYVDPSVRQSMRHLFGTWRGVFPPQTLQTIEKELGFAPAVNSSASASATLRSDSQSHPLQSIHVNPKYLERKHLQQSSRSKGVVDDMTGAISYSNEDPERADRASGAARPWVNPSLNMHLYENNQHSHRNASNDPVPEKSIGASYGGNEYGSDLSRNLGSGMGRTGGRVTESGHDRSWFKAGGVAGTTSVKRNGFSLKRNFSKIEEDLQPTQHMPSIQNSLISSSWKHSEEEEYMWDDMNFGLAGHGAPKFTNNGSKDPWTDNDENLEVEDHLQIQNPFQANVDMEVPTESLAIERRQLLAFKRHPSLSLQMQEQHSIDELNQKPHQSEGFASTLGGLTGNTISSAARIGNRPFLPNATIGLAGTVGQRFHPLGAGSSSRQSPLQQESPSPPVSAHHHPHQMQDLAEQDHPQTHKTSKFLGGLQNQYIKDSLPSLPPIDQDCNLRSSQQKKLQAPFCLTKSFQPRHPLLLGSSHTEVMAKTEKPPMSKVSLSRKTPERSTTSSLEAATVKSAIFSIMPITSSLPTTSSLDTRNPPSKLGVRSSWAGGPSPTTLISSVSAIISPSSLGPHNDYSSALPKVPLQKAGQPSRVSTLQPASSNISSISTQTVSATNNTANPIANLLSSLIAKGMITAETESPAKVPSEMLSRLEDQSKSITTSSSLPVASVSGSAALPTPTQDMVDDTAKTPISLSESASTEIRDFIGFEFKPRLIRELHPPVIKGLFDDLPHQCGVCGLRLKFQEEFNRHLEWHATREREQNSSRRWYPKSSDWVIGKADGPSEHDCSDYVDTYSKENDSCQEDVMVPGDEKQCLCVFCGELFEDFYSQENDEWMFKGAIYMTNSDSNSDLGIGKASTASGPIIHARCVSENIISNNNIKNEQKEFPLCSKHLLAVLSKAPRVILMRKRPLRSVGHKQSNNT 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0987 1103 MobiDBLite consensus disorder prediction 10 25 - -
Lal24g0987 1103 SMART 558neu5 97 219 IPR006569 -
Lal24g0987 1103 ProSiteProfiles CID domain profile. 94 222 IPR006569 -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 708 722 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 584 598 - -
Lal24g0987 1103 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 15 1057 - -
Lal24g0987 1103 CDD CID_Pcf11 99 211 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 1 28 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 708 729 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 310 358 - -
Lal24g0987 1103 Pfam CID domain 103 213 IPR006569 -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 841 864 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 556 576 - -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 662 686 - -
Lal24g0987 1103 Gene3D - 92 219 IPR008942 -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 257 286 - -
Lal24g0987 1103 ProSitePatterns Zinc finger C2H2 type domain signature. 915 935 IPR013087 -
Lal24g0987 1103 MobiDBLite consensus disorder prediction 555 601 - -
Lal24g0987 1103 SUPERFAMILY ENTH/VHS domain 95 223 IPR008942 -
Lal24g0987 1103 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 15 1057 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0987 Lal-Chr24 8507959 8517033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0987 34 423 C2H2 Transcription Factor Family AT4G04885 37.010 1.77e-55 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0987 CID 1.2e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0987 K14400 - gmx:100788958 1021.54