Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0934 ATGATTGACTGTGGGGCTTCCCACAACTTCATTTCAAAAAACTTGGTGGACAGTTTACAGTTGTGGGTGGAGGAGACTAAAACCTATCTTGTAAAGGTGGGGAATGGACACAAGGTGAAATGTCAAGAAAAATGTGCTCAACTCAGGTTCTATATGCAACAGTTGGAGGTGATCCCAGACTTTTATCTATTTGGGTTGGGAGGGATGGACTTGGTGCTGAAATTAAAATGGTTAGCAAGCCTGGGAGAAGTGAAAGCTGACTTTGGGAAAACAAAATTAACTCTCAAAAAGGGGAACTCAGTAATCACAATAGTAGGGGACCCTGCATTGAACATGATAAAACTTTCCTATGGAGCTTTCATGCAAGTGCTTTTAGAGAAGAGGGGAGGTTTGCGATTGCACTATGATACAGGACAAGGGTTACCACCTTCTATTAGGCAAGATCATGCCATTCATTTGAAGAATGGAGCTAAGTTCTGGTTTAATTCCAACTATAACAACTCAACAAGAATTTCTCCTTTTCAAGCTTTGTATGAGAGGGAGCCTCCTATATTGTTGAAGGCAACGACTATGCAAGACAAATTCCTAGACTTCCCACTTGAGGACAAGTTAATTCTTTTAGGGGGAAATACTGAAGTTCTCCGAAAGATGGGGAAGTACACTGGGATTAGTTCAGAATGTGCCATTCCAACAGACAGTAGGGTCGATCTTCCTATAGCGAAGCGGGCGCCGATTATGGCCCAAGTAATTATTGGTACTCCGGGCACAATAAAGAAGTGGATGACTTTTAAGAAGCTCGGTGTAACCAGATTAAAGATACTTGTTTTTGATGAGGCTGATCAAATGCTTGCCGAGGATGGTTTTAAAGATGACTCCTTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTGTTGTAATTGGACCGGACTGGCCGGTCCAACCGTCAACCGCCTATGTAGATGACCTCGTATATGTGGAAAACTGGAAACTCTTCCCAGCCGTTTTGGGCCGTGGAAAATCCGGTCCAACCGGGTTAGACCAGCCGCCCACCATTGTCTTGCCGCCTGGAGAGGATCGTCTTCCTCGCCGTCACCATCGCTATCTCTTCCTCGCCGTCGCCATCTCCAACAGGTTTTTATTTTTTACGTTTTCAGATGGAGAGGTTCTTCTGTTTTCTGCCACATTCAATGACATTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGACCATAATAAACTTTTTGTGAAGAAGGAAGAACTATCTTTAGATGCAGTGAAGCAATACAAAGTGCACTGTCCTGATGAACTCTCTAAGATTGAAGTCATCAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACAAGAGAAAGTGCAAAAATGTTGCATAAATCACTTGTTGATTTGGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTAACTCAAGTTCTTATATCAACTGATGTTCTTGCCAGAGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCAGTGAAACATACTCCTGAGTATAATACCCGTGAACGCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGACGCAAGGGGGCTGTATTTAACCTAATATGTGGTGAAAGGGATGAAAGGCTTATGTCAAAGATTGAGAACCATTTTGGCACCCATGTAACTGAGGTGAAGGAAAAAAGTGTAGAGGACTATAAAGGCGCTCTTAAGGAGGCTGGTTTACTGCAATGA 1857 0.42 MIDCGASHNFISKNLVDSLQLWVEETKTYLVKVGNGHKVKCQEKCAQLRFYMQQLEVIPDFYLFGLGGMDLVLKLKWLASLGEVKADFGKTKLTLKKGNSVITIVGDPALNMIKLSYGAFMQVLLEKRGGLRLHYDTGQGLPPSIRQDHAIHLKNGAKFWFNSNYNNSTRISPFQALYEREPPILLKATTMQDKFLDFPLEDKLILLGGNTEVLRKMGKYTGISSECAIPTDSRVDLPIAKRAPIMAQVIIGTPGTIKKWMTFKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVVVIGPDWPVQPSTAYVDDLVYVENWKLFPAVLGRGKSGPTGLDQPPTIVLPPGEDRLPRRHHRYLFLAVAISNRFLFFTFSDGEVLLFSATFNDIVKNFVSRTVKKDHNKLFVKKEELSLDAVKQYKVHCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRESAKMLHKSLVDLGYEVTSIQGALDHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTPEYNTREREPDYEVYLHRVGRAGRFGRKGAVFNLICGERDERLMSKIENHFGTHVTEVKEKSVEDYKGALKEAGLLQ 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0934 618 Gene3D - 210 427 IPR027417 -
Lal24g0934 618 Pfam Helicase conserved C-terminal domain 444 567 IPR001650 -
Lal24g0934 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 608 IPR001650 -
Lal24g0934 618 Pfam Retroviral aspartyl protease 2 97 - -
Lal24g0934 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 584 IPR027417 -
Lal24g0934 618 SMART helicmild6 473 567 IPR001650 -
Lal24g0934 618 Pfam DEAD/DEAH box helicase 212 309 IPR011545 GO:0003676|GO:0005524
Lal24g0934 618 Gene3D Acid Proteases 1 104 IPR021109 -
Lal24g0934 618 CDD SF2_C_DEAD 431 576 - -
Lal24g0934 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 389 597 - -
Lal24g0934 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 210 309 - -
Lal24g0934 618 CDD retropepsin_like 1 79 - -
Lal24g0934 618 PANTHER DEAD-BOX HELICASE DBP80 210 309 - -
Lal24g0934 618 PANTHER DEAD-BOX HELICASE DBP80 389 597 - -
Lal24g0934 618 Gene3D - 428 608 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0934 Lal-Chr24 7817799 7823815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0934 392 599 Eukaryotic Initiation Factors Gene Family AT1G72730 37.264 4.26e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0934 K18655 - gmx:100784739 374.4