Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0900 ATGGATAATAAACCTGAATCCTCTGATTCTAAGGGAACGAAGAGGGACTTTAGCACAGCGATCTTGGAGCGGAAGAAGGCGGCAAATCGTCTCGTCGTCGATGAAGCCATCAATGATGACAACTCCGTCATCGCTCTCCACCCCGATACTATGGAGAAGCTCCAGATTTTTCGGGGTGATACTATTTTGATCAAGGGAAAGAAAAGGAAAGATACAGTTTGTATTGCACTTGCTGATGACAAGTGTGATGAGCCAAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTAAGGGTTAGGCTTGGAGATGTTGTTTCGGTTCATCAATGTCCTGACGTCAAATATGGAAAGCGAGTCCACATTTTACCTGTGGATGACACTATTGAAGGGGTAACTGGGAATCTCTTTGATGCATATCTAAAACCTTATTTCTTGGAAGCATACCGTCCGTTGAGGAAGGGTGACTTTTTCCTTGTGAGAGGGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGAACCTGGTGAATATTGTGTTGTTGCTCCAGACACAGAGATCTTCTGTGAAGGAGAACCTGTTAAAAGGGAAGATGAGAATCGATTAGATGAGATTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAAATGGCTCAGATTCGGGAACTGGTGGAACTGCCACTGAGGCATCCACAGTTATTCAAATCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTCTATGGACCCCCTGGTTCTGGTAAGACTTTAATTGCCCGAGCAGTTGCGAATGAAACTGGTGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAACTTGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATGCACCCTCTATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGCGAAGTTGAAAGGAGGATTGTTTCCCAGCTCTTGACCCTCATGGATGGGCTTAAATCACGCGCACATGTAATTGTTATGGGAGCTACAAATCGTCCTAATAGCATTGACCCTGCTCTTAGGAGATTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTTCTTCGTATCCATACCAAGAATATGAAGCTTGCTGAAGATGTTGATTTAGAAAGGATTTCTAAGGACACCCATGGTTATGTCGGTGCTGATCTAGCTGCTTTGTGTACTGAAGCTGCCCTCCAGTGCATCAGAGAGAAAATGGATGTAATTGATTTGGAAGATGAAACCATTGATGCTGAGATCCTGAACTCAATGGCAGTGACCAATGAGCACTTCCATACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTCGAAGTGCCTAATGTCAGCTGGCAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAAAAATTTGAAAAGTTTGGAATGTCTCCTTCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTCTGGCAAAAGCAATTGCCAATGAGTGTCAGGCCAACTTCATCAGTATAAAAGGTCCCGAGCTACTCACCATGTGGTTTGGAGAAAGTGAGGCTAATGTAAGGGAAATTTTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGATTCTATTGCAACCCAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTACTTACAGAAATGGATGGGATGTCAGCAAAGAAGACTGTGTTCATCATTGGGGCCACTAATCGGCCAGACATTATAGACCCTGCACTTTTGAGGCCAGGCCGTCTAGATCAGTTGATTTATATACCCCTTCCAGACGAGGAATCCCGTTTTCAGATATTCAAATCTTGTTTGAGAAAATCCCCCATCTCAAAAGACGTTGACCTTAGAGCTCTAGCCAAGTATACTCAAGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGATATTGAGAGGGAAAGGAGGAGAAAAGATAACCCAGAGGCCATGGAAGAGGATATCATAGACGAAGATGTAGCAGAAATCAAGGCAGCACATTTTGAAGAATCGATGAAGTATGCACGAAGGAGTGTAAGTGATGCCGACATTTGCAAGTACCAGGCCTTTGCCCAAACATTGCAGCAGTCAAGAGGGTTTGGAAGTGAGTTCAGATTTGCAGATACCAGCTCTGGTGCTGCTGCTGCTGGTAGCGGTGCTGCAGCAGCTGACCCTTTTGCAAGTACTGGTGGAGCTGATGATGATGATCTTTACAATTAG 2439 0.442 MDNKPESSDSKGTKRDFSTAILERKKAANRLVVDEAINDDNSVIALHPDTMEKLQIFRGDTILIKGKKRKDTVCIALADDKCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPLRKGDFFLVRGGMRSVEFKVIETEPGEYCVVAPDTEIFCEGEPVKREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFHTALGSSNPSALRETVVEVPNVSWQDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRKDNPEAMEEDIIDEDVAEIKAAHFEESMKYARRSVSDADICKYQAFAQTLQQSRGFGSEFRFADTSSGAAAAGSGAAAADPFASTGGADDDDLYN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0900 812 Gene3D - 655 764 - -
Lal24g0900 812 Gene3D - 210 374 IPR027417 -
Lal24g0900 812 MobiDBLite consensus disorder prediction 788 812 - -
Lal24g0900 812 Gene3D - 468 651 IPR027417 -
Lal24g0900 812 SMART CDC48_2_2 130 196 IPR004201 -
Lal24g0900 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 765 IPR027417 -
Lal24g0900 812 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Lal24g0900 812 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Lal24g0900 812 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Lal24g0900 812 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Lal24g0900 812 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 782 - -
Lal24g0900 812 Pfam AAA+ lid domain 397 439 IPR041569 -
Lal24g0900 812 Pfam AAA+ lid domain 673 713 IPR041569 -
Lal24g0900 812 Gene3D - 7 112 - -
Lal24g0900 812 Gene3D - 376 467 - -
Lal24g0900 812 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Lal24g0900 812 SUPERFAMILY ADC-like 28 110 IPR009010 -
Lal24g0900 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 466 IPR027417 -
Lal24g0900 812 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 768 IPR005938 GO:0016787
Lal24g0900 812 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Lal24g0900 812 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Lal24g0900 812 SMART CDC48_N_2 30 113 IPR003338 -
Lal24g0900 812 Gene3D - 113 209 - -
Lal24g0900 812 CDD AAA 484 651 - -
Lal24g0900 812 PANTHER AAA-FAMILY ATPASE 5 782 - -
Lal24g0900 812 CDD AAA 211 374 - -
Lal24g0900 812 SMART AAA_5 241 377 IPR003593 -
Lal24g0900 812 SMART AAA_5 514 653 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0900 Lal-Chr24 7423578 7428189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0900 447 710 Calmodulin-binding Proteins AT3G56690 47.727 7.93e-79 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0900 K13525 - gmx:100814141 1500.34