Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0891 ATGTCTACCTCTGCTACTTCTCTTGCACTTCCTTCCCTTTCTCTTCAACCCTTAAAACAACATCAACAATGCTTTTCTTCACTCTCTCTTCTCAACCCTAACTCCAACCCCATCTCCATTTCCGCAACCTTTCTCCGTTCCCACGCCGCGCCGCGCACGGCATTGTTGTCGTCTCGCTTCGTTTCCAAGGTTTCACTCTCCGAGTTTGACCAGGAAGAGGATACTTTTAGCGAAGAAGACGATGAACCCAGATACAAAAACAACAACAACAACAACAACAACAACAATAGCAATGAGTTTAAGCTCTTTGTTGGTAACCTTCCCTTTGGTGTTGATAGTGCTCAACTCGCTGAGATTTTTGAAGGCGCTGGTGAGGTTGAAAGGGTTGAGGTGATTTATGATAAAATGACAGGGAGAAGCAGGGGATTTGGTTTTGTGAATATGTCCTCAGCTGAGGATGTTGAAGCAGCTGTTCAGAAATTAAATGGATATGAAGTAGATGGAAGGCAACTGAGAGTGAATGCTGGACCTCCTCCTCCTCGGGATGAGAATTCCCGGTTTGGGAGTTCTCGATTTGATGGGAATTCTCGTTTTGATGGGAATTCCCGGTTTGGGAGGGGTCCTCCCAGAGGAGGTGGTTCTGCTGCAGATAATGGAAATCGAGTTCATGTAGGTAACCTTGCATGGGGCGTTGACGAGGGAGCGCTTGAGGAATTGTTTGGGGAACAGGGAAAGGTTTTGGAAGCGAAAGTGATATATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGGTTTGTGACCTATGGTTCCCCCGAAGAGGTCAACAAAGCTGTCCAGTCCTTAGATGGTGCGGACTTAAATGGCAGAGCTATTCGTGTCTCATTAGCAGATGCTAAGCCCCCGAGACGCGAATTTTGA 918 0.4695 MSTSATSLALPSLSLQPLKQHQQCFSSLSLLNPNSNPISISATFLRSHAAPRTALLSSRFVSKVSLSEFDQEEDTFSEEDDEPRYKNNNNNNNNNNSNEFKLFVGNLPFGVDSAQLAEIFEGAGEVERVEVIYDKMTGRSRGFGFVNMSSAEDVEAAVQKLNGYEVDGRQLRVNAGPPPPRDENSRFGSSRFDGNSRFDGNSRFGRGPPRGGGSAADNGNRVHVGNLAWGVDEGALEELFGEQGKVLEAKVIYDRESGRSRGFGFVTYGSPEEVNKAVQSLDGADLNGRAIRVSLADAKPPRREF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0891 305 MobiDBLite consensus disorder prediction 170 219 - -
Lal24g0891 305 CDD RRM_HP0827_like 101 174 - -
Lal24g0891 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 292 IPR000504 GO:0003723
Lal24g0891 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
Lal24g0891 305 Gene3D - 68 215 IPR012677 -
Lal24g0891 305 Gene3D - 216 305 IPR012677 -
Lal24g0891 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Lal24g0891 305 SMART rrm1_1 101 174 IPR000504 GO:0003723
Lal24g0891 305 MobiDBLite consensus disorder prediction 71 97 - -
Lal24g0891 305 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 302 - -
Lal24g0891 305 PANTHER OS02G0815200 PROTEIN 1 302 - -
Lal24g0891 305 SUPERFAMILY RNA-binding domain, RBD 88 207 IPR035979 GO:0003676
Lal24g0891 305 SUPERFAMILY RNA-binding domain, RBD 216 303 IPR035979 GO:0003676
Lal24g0891 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Lal24g0891 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0891 Lal-Chr24 7319484 7322182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0891 102 305 Eukaryotic Initiation Factors Gene Family AT3G16380 29.412 5.72e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0891 - - lang:109360912 503.827