Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0889 ATGATAGCATTTATGGAATCAAAGGAAGAGACAGAAGAGATAGAGAAGTGTGTGGATCCTCAGCTATGGCATGCCTGTGCAGGTGGGATGGTGAAGATGCCACAGCTGAAGAGCATGGTCTATTACTTCCCTCAAGGTCATGCTGAACATGCATGTGGTCCAGTGAATTTCATGACTTGTCCCAGGGTTCAACCTTTGGTTCTTTGCAGGGTTGAAGCTATTAAATACATGGCTGAACCTGAAACTGATGAGGTATATGCCAAACTTAGGCTCACTCCTGTAAATCGAAATGATGCCGATTATGCCTGTGGCAGTGCTGGAGGCATCAATGAGTCTGAGAGTCAAGAAAAGCCTCCTTTATTTGCAAAGACCTTAACTCAATCCGATGCCAACAATGGTGGAGGGTTTTCTGTTCCTAGATATTGTGCCGAGACAGTTTTTCCTCGTCTAGACTATTCGGCTGAACCTCCGGTTCAAAACATCCTCGCCAAAGATGTTCACAGTGAAACATGGAAATTCAGGCATATTTATAGGGGAACGCCGAGGCGGCATCTATTGACAACCGGGTGGAGTACTTTTGTCAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTAAGAGCAGAAAATGGGGATCTATGTGTTGGAATTCGGAGAGCGAAGAAGGGCCTTGTTGGTGGACCTTGGGGTTCATCAGGGTGGAACCCTGCAGGTGGGAATTCTACTGTGCCTTATGGTGGAATTGCAGCATATTTGAGAGGGGGTGATGTGAATTGTCTCCTTAGAAATGATAACAACAGCAATGGATTGAATTTGAACCCGCCGAGTTCGAGAATGATCGGGAAGGGAAAAGTGAAACCAGAAACAGTTATTGAAGCTGTTACTCTTGCTGCAAATAAGCAACCTTTTGAAGTTGTTTACTACCCTCGGGCTAGTACTCCGGAGTATTGTGTGAAGGCCCCTTTAATTGAAGCAGCATTACATAATAGGTGGTCTTCTGGAATGAGGTTCAAGATGCCCTTCGAAACTGAGGACTCCGCGCGGATAAGTTGGTTTATGGGAACCATTTCTTCAGTCCAGGTTGCTGATCCCCTTCGCTGGCCTACTTCACCTTGGAGGCTTCTTCAGGTTAAATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCATGGCTAGTTGAATTGGTATCTAACATGCCTGCTATGCATCTTTCTCCATTCTCACCTCCACGGAAGAAATTGAGATTTCCCCAACACTCCGATTTCCCCCTTGATGACCAGATTCCAATGCCAACATTCCCCAATAACCTTCTAGTTCCCAACAACAACAACAACTTCTTCAGTTATCCACCCGAAAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCTTTACGGTTTATCCTTACCGGGCCTCAACCTCAACAGACGGCAGTCAGGTCTAACTCCTTCCGGTTTCCCACCTCCTGATCATGCTGCTACACCAATGAGAATCTCGACTAACATGTTATTTCAAAAGCCCAGCACGAGTGAGAATGTCTCTTCTTTATTATCTACAGCAAATCCTACTCAATCTACAAAGAAACCTGATGGTGTAAAGACACATCCCCAGCTTGTACTCTTTGGCCAAAAAATTCTCACCGAACAGCAGATCTCTATGAGCAGCTCGGGGGACACGGTATCCCCCGATCGAAATGCGGATAAATTGACCAAAATTTCTGATGGTAATGGATCAACTTGTCATCACCACGGCCTACAGGAATGCTCCTTATGTGAAAGGTTCCCCTGGTATAAGGATTACCACCAAGAAACTGAGGCCAATTTGGAGATTGGTCACTGTGAAGTTTTTATGGAACCGGATGATGTAGGTCAGACCATGGATCTCTCATTGTTACGGTCTTATGATGAACTATACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAGTTCGAGATGCTAAGTCATGTTGTCTACCGTGATATAATCGGGGCAGTCAGACACATTGGAGATGAACCATTCTGGTAG 2043 0.4547 MIAFMESKEETEEIEKCVDPQLWHACAGGMVKMPQLKSMVYYFPQGHAEHACGPVNFMTCPRVQPLVLCRVEAIKYMAEPETDEVYAKLRLTPVNRNDADYACGSAGGINESESQEKPPLFAKTLTQSDANNGGGFSVPRYCAETVFPRLDYSAEPPVQNILAKDVHSETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGLVGGPWGSSGWNPAGGNSTVPYGGIAAYLRGGDVNCLLRNDNNSNGLNLNPPSSRMIGKGKVKPETVIEAVTLAANKQPFEVVYYPRASTPEYCVKAPLIEAALHNRWSSGMRFKMPFETEDSARISWFMGTISSVQVADPLRWPTSPWRLLQVKWDEPDLLQNVRRVSPWLVELVSNMPAMHLSPFSPPRKKLRFPQHSDFPLDDQIPMPTFPNNLLVPNNNNNFFSYPPESSPAGMQGARHALYGLSLPGLNLNRRQSGLTPSGFPPPDHAATPMRISTNMLFQKPSTSENVSSLLSTANPTQSTKKPDGVKTHPQLVLFGQKILTEQQISMSSSGDTVSPDRNADKLTKISDGNGSTCHHHGLQECSLCERFPWYKDYHQETEANLEIGHCEVFMEPDDVGQTMDLSLLRSYDELYRKLADMFGIEKFEMLSHVVYRDIIGAVRHIGDEPFW 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0889 680 Pfam Auxin response factor 295 378 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal24g0889 680 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Lal24g0889 680 MobiDBLite consensus disorder prediction 515 539 - -
Lal24g0889 680 CDD B3_DNA 119 221 IPR003340 GO:0003677
Lal24g0889 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal24g0889 680 Gene3D - 615 680 - -
Lal24g0889 680 SUPERFAMILY DNA-binding pseudobarrel domain 114 221 IPR015300 -
Lal24g0889 680 MobiDBLite consensus disorder prediction 515 537 - -
Lal24g0889 680 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Lal24g0889 680 Gene3D - 332 406 - -
Lal24g0889 680 SMART B3_2 121 223 IPR003340 GO:0003677
Lal24g0889 680 ProSiteProfiles PB1 domain profile. 616 680 IPR000270 GO:0005515
Lal24g0889 680 PANTHER AUXIN RESPONSE FACTOR 7 679 - -
Lal24g0889 680 Gene3D - 119 223 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0889 Lal-Chr24 7272787 7276678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0889 15 679 B3 DNA Binding Superfamily AT4G30080 55.704 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal24g0889 B3 4.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0889 - - gmx:100796522 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0889 24 7272787 7276678 Lal12g0158 12 1119401 1122383 ECH
Lal24g0889 24 7272787 7276678 Lal24g0126 24 899001 902404 ECH
Lal24g0889 24 7272787 7276678 Lal24g0889 24 7272787 7276678 ECH
Lal24g0889 24 7272787 7276678 Lal9g0276 9 1721226 1725148 ECH
Lal24g0889 24 7272787 7276678 Lal8g0149 8 1013683 1017579 ECH
Lal24g0889 24 7272787 7276678 Lal10g1230 10 18631524 18635382 ECH