Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0867 ATGGGCAACGTAGGAAGTAGCGGGATTAACAACCGTCGTAGATCTAGCGACAGCGGCCAACGGATTCATCCGCCTCCTCCTCAACCGGTGGCGGCTCAGCCAGAAATCACAGCCAACCGGTTCATTTACCAGGAAGCTGCCACCACTCCGTATCAGACCTACCCTGCCTACTATCCTTCACCGTCGCCAACTATGCCTTTGCCGGCTGCGTATGACCACCAACACCACCACCACCACCATCGTCCAATGTTGGACCCAACGTGGAGCCGCTATCCACAACCGCAACTGCCGCCGCCTCCGATGCCTTATGTGGAGCACCAGAGAGCGGTTACAATAAAGAATGCTGTTAACATCAAGAAGGAGACTCTGAGAATTGAGGCTGATGAGGACAATCCTGGCCATTTCCTTGTGTCGTTTACATTTGATGCCACCATTGATGGAAGCATCACCATACTTTTCTTTGCGAAAGAAGGTGAATTTTGCATCCTTACATCAATGAAGGAAAACACTCTTCCACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCTAATGGAACTGGTATCGACTTTTCAATATTTGAAGAGTCCGAGTTGTTGAAACTGGATGACATGGATGTATATCCTCTAGCTGTTAAGGCAAGTGCATCCTCTGGCGATCATGATGGATCAAAAGAAACTCCATTATCCAGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGAAGGCTGCCGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTAAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAATGGAGAATGACTTGGATGGGAATGACCCAGGAAAAGAGTGCGTTATCTGCTTGTCAGAGCCTCGGGACACGACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGCGGATGTGCGAAGGTTTTGAGGTTGCAAACAAGTAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTCGGTCCTGAGCCCGAGAAATGA 1056 0.483 MGNVGSSGINNRRRSSDSGQRIHPPPPQPVAAQPEITANRFIYQEAATTPYQTYPAYYPSPSPTMPLPAAYDHQHHHHHHRPMLDPTWSRYPQPQLPPPPMPYVEHQRAVTIKNAVNIKKETLRIEADEDNPGHFLVSFTFDATIDGSITILFFAKEGEFCILTSMKENTLPPVTVNFQQGLGQKFRQPNGTGIDFSIFEESELLKLDDMDVYPLAVKASASSGDHDGSKETPLSSNTNSQITQAVFEKKAAEFRVKVVKQILWVNGMRYELQEIYGIGNSMENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRLQTSRCPICRQPVERLLEIKVGPEPEK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0867 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 351 - -
Lal24g0867 351 Pfam Zinc finger, C3HC4 type (RING finger) 293 339 - -
Lal24g0867 351 MobiDBLite consensus disorder prediction 1 15 - -
Lal24g0867 351 SUPERFAMILY RING/U-box 294 340 - -
Lal24g0867 351 PANTHER MAHOGUNIN 1 351 IPR045194 GO:0061630
Lal24g0867 351 SMART ring_2 295 333 IPR001841 -
Lal24g0867 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 344 IPR013083 -
Lal24g0867 351 MobiDBLite consensus disorder prediction 1 34 - -
Lal24g0867 351 ProSiteProfiles Zinc finger RING-type profile. 295 334 IPR001841 -
Lal24g0867 351 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 294 334 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0867 Lal-Chr24 7055991 7064933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0867 51 314 C3H Transcription Factor Family AT3G09770 57.609 9.95e-98 291