Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0853 ATGGCCGCAGCGGCGCGTCCCCTCGTCACCGTCCAATCCCTCGACGGCGACATTGCCACCGAAGCCACCCCCACCGTCCCCCTCCCTGACGTCATGAAATCCTCCATTCGCCCCGACATCGTCAACTACGTTCACTCCAACATCTCTAAAAACTCCCGCCAGCCCTACGCCGTTTCCCGCCGCGCCGGTCACCAGACCTCCGCCGAATCGTGGGGAACCGGTCGTGCAGTCTCCCGTATCCCCCGTGTTTCCGGCGGCGGAACCCACCGCGCTGGCCAAGCAGCATTCGGAAACATGTGTCGTGGCGGACGCATGTTCGCACCAACCAGAATCTGGCGCCGATGGCACCGCAAGATCAACATTAACCAGAAACGATACGCTGTCGTTTCAGCTATTGCTGCTTCTGCTATCCCTTCACTCGTCCTCGCCCATGGTCATCGTATTGAATCTGTCCCTGAACTTCCCCTCGTTGTTAGTGATTCCGCCGAAGGAGTCGAGAAAACAAAAGACGCAATCAAGGTTCTGAAGCAGATCGGAGCTTTTCCCGATGCCGAGAAAGCGAAAGACAGCCGCGGTATCCGTCCTGGAAAGGGAAAGATGAGGAATCGTCGCTATATTTCGCGAAAAGGACCTCTGATTGTTTATGGAACCGAAGGCGCGAAAGCTGTGAAAGCTTTTCGCAATGTACCTGGTGTTGAGATTGCTAATGTTGAGAGGCTCAATCTTTTGAAGCTTGCTCCAGGTGGACACCTTGGGAGGTTTGTGGTTTGGACTAAATCGGCTTTCGAGAAACTTGACTCGATTTATGGTTCTTTTGATAAGGCTGCAGAGAAGAAGAATGGCTATGTGTTGCCGAGGTCGAAGATGGTGAATGCTGATTTGTCTAGGATTATTAACTCTGATGAGGTGCAGTCTGTTGTGAAGCCAATCAAGAAGGAAGTGAAGAGGACTTCGATCAAGAAGAATCCACTTAAGAATCTGAATGTTATGCTGAAATTGAATCCATATGCTAAGACTGCAAAGAGGATGGCACTGCTTGCTGAGGAGCAGAGGATTAAGGCAAAGAAGGAAAAGCTTGACAAGAAGAGGAAGACTACTGTTTCTAAGGGTGATGCTTCTACAATTAGAGCTGCAGGGAAAGCATGGTATAAAACTATGGTGTCTGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTGA 1221 0.5037 MAAAARPLVTVQSLDGDIATEATPTVPLPDVMKSSIRPDIVNYVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKININQKRYAVVSAIAASAIPSLVLAHGHRIESVPELPLVVSDSAEGVEKTKDAIKVLKQIGAFPDAEKAKDSRGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNVPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKAAEKKNGYVLPRSKMVNADLSRIINSDEVQSVVKPIKKEVKRTSIKKNPLKNLNVMLKLNPYAKTAKRMALLAEEQRIKAKKEKLDKKRKTTVSKGDASTIRAAGKAWYKTMVSDSDYAEFDNFSKWLGVSQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0853 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 352 IPR025755 -
Lal24g0853 406 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal24g0853 406 Coils Coil 345 365 - -
Lal24g0853 406 SUPERFAMILY Ribosomal protein L4 10 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal24g0853 406 PANTHER BNAC03G35890D PROTEIN 2 406 - -
Lal24g0853 406 PANTHER 60S RIBOSOMAL PROTEIN L4 2 406 IPR045240 -
Lal24g0853 406 MobiDBLite consensus disorder prediction 54 74 - -
Lal24g0853 406 MobiDBLite consensus disorder prediction 54 73 - -
Lal24g0853 406 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0853 Lal-Chr24 6904232 6906805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0853 2 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.259 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0853 K02930 - gmx:100779764 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0853 24 6904232 6906805 Lal24g0853 24 6904232 6906805 ECH
Lal13g1144 13 8760925 8768348 Lal24g0853 24 6904232 6906805 LSH
Lal1g1833 1 20646755 20649006 Lal24g0853 24 6904232 6906805 PCT
Lal20g0078 20 516018 518033 Lal24g0853 24 6904232 6906805 PCT
Lal24g0853 24 6904232 6906805 Lal1g1833 1 20646755 20649006 PCT
Lal24g0853 24 6904232 6906805 Lal20g0078 20 516018 518033 PCT