Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0850 ATGCCACCTAAGCAATCAAAAGCAGATATAGCGAAGAAGCAGAAGGTAATAGAAGACAAAACCTTCGGTCTCAAGAACAAGAACAAAAGCAAAAATGTTCAGAAGTATGTTCAGAATCTCAAACAGTCCGTTCAACAACCCGACGCTTCAAAAATCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAAGCTAAGGAAAAAGAGCTAAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTCCCAGTTGGTGTTGATCCTAAGTCCATACTATGTGAGTTTTTTAAAGTGGGGCAGTGTACGAAGGGATTCAAATGCAAGTTCTCCCATGATTTGAATATTCAAAGGAAAGGGGAAAAGATTGACATCTATAGCGATAAGCGCGACGATGAAACAATGGAGGATTGGGATCAAGAGACTTTGGAGAAGGTGGTAGAGTCAAAGAAAAATGAGTATAATCAGAACAAACCTACTGACATAGTCTGTAAACACTTTTTGGATGCGGTGGAGAGGAAGCAATATGGTTGGTTTTGGGTCTGCCCTAATGGTGGGAAGAATTGCATCTACAGACATGCACTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCTCTGTTAGAGGAAGAAAAGGATAAGTTAACAATTGAAGAAGAGATCGAAAATCAGCGTGCCAAAGTAGCAACTACAACTCCTATGACTCCCGATTTATTCTTTCAATGGAAGAAGAAGAAGATGGATGAGAGAGATGCCAATTTGGCTGCACAACAGGCAGATAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTACCTTGTTTGTAGATGATGATGAAGCATATGAGAAGTACCATAGAGAACCAGAATCAAATGACACTGAACAGAAAGCAAATGGGAATTCTGCTGAGCATGGTCCTAGCACGTCAGCAACAGCTGGTTCTGATGCCGATGACATTGATGATGATGATGATGAATTGGACTTGGATGAGTTGAATGAATTGGAAGCAAGCTTATCAAAGATGTCGATTCAAATAAAGGAGCCAGGAGCTGAAGCTTAA 1074 0.406 MPPKQSKADIAKKQKVIEDKTFGLKNKNKSKNVQKYVQNLKQSVQQPDASKIAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNIQRKGEKIDIYSDKRDDETMEDWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWVCPNGGKNCIYRHALPPGYVLKSQMKALLEEEKDKLTIEEEIENQRAKVATTTPMTPDLFFQWKKKKMDERDANLAAQQADRAKNDRMSGRELFLSDATLFVDDDEAYEKYHREPESNDTEQKANGNSAEHGPSTSATAGSDADDIDDDDDELDLDELNELEASLSKMSIQIKEPGAEA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0850 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 356 - -
Lal24g0850 357 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 356 - -
Lal24g0850 357 Gene3D - 203 277 - -
Lal24g0850 357 Gene3D - 85 202 - -
Lal24g0850 357 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Lal24g0850 357 Pfam DRG Family Regulatory Proteins, Tma46 213 295 IPR032378 -
Lal24g0850 357 ProSiteProfiles Zinc finger C3H1-type profile. 156 194 IPR000571 GO:0046872
Lal24g0850 357 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Lal24g0850 357 MobiDBLite consensus disorder prediction 289 331 - -
Lal24g0850 357 Coils Coil 204 226 - -
Lal24g0850 357 SMART c3hfinal6 156 193 IPR000571 GO:0046872
Lal24g0850 357 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Lal24g0850 357 Coils Coil 49 71 - -
Lal24g0850 357 MobiDBLite consensus disorder prediction 299 319 - -
Lal24g0850 357 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0850 Lal-Chr24 6876098 6881775 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal24g0850 DFRP_C 2.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0850 - - gmx:100806617 577.015